Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycf22 and Synpcc7942_0352 overlap by 10 nucleotides Synpcc7942_0352 and Synpcc7942_0353 are separated by 38 nucleotides Synpcc7942_0353 and bgl are separated by 399 nucleotides
Synpcc7942_0351: ycf22 - putative ABC transport system substrate-binding protein, at 343,699 to 344,832
ycf22
Synpcc7942_0352: Synpcc7942_0352 - Methionine sulfoxide reductase B, at 344,823 to 345,431
_0352
Synpcc7942_0353: Synpcc7942_0353 - Na+-dependent transporter-like, at 345,470 to 346,432
_0353
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Position (kb) 345
346
347 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 344.518 kb on - strand, within ycf22 at 344.518 kb on - strand, within ycf22 at 344.551 kb on + strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.587 kb on - strand, within ycf22 at 344.591 kb on + strand, within ycf22 at 344.641 kb on + strand, within ycf22 at 344.732 kb on - strand at 344.754 kb on + strand at 344.795 kb on + strand at 344.797 kb on + strand at 344.816 kb on + strand at 344.816 kb on + strand at 344.824 kb on - strand at 344.824 kb on - strand at 344.826 kb on + strand at 344.829 kb on - strand at 344.829 kb on - strand at 344.831 kb on + strand at 344.834 kb on - strand at 344.850 kb on + strand at 344.858 kb on - strand at 344.864 kb on - strand at 344.899 kb on - strand, within Synpcc7942_0352 at 344.904 kb on + strand, within Synpcc7942_0352 at 344.916 kb on + strand, within Synpcc7942_0352 at 344.924 kb on + strand, within Synpcc7942_0352 at 344.943 kb on + strand, within Synpcc7942_0352 at 344.943 kb on + strand, within Synpcc7942_0352 at 345.037 kb on + strand, within Synpcc7942_0352 at 345.045 kb on - strand, within Synpcc7942_0352 at 345.047 kb on - strand, within Synpcc7942_0352 at 345.061 kb on + strand, within Synpcc7942_0352 at 345.069 kb on - strand, within Synpcc7942_0352 at 345.085 kb on + strand, within Synpcc7942_0352 at 345.090 kb on + strand, within Synpcc7942_0352 at 345.134 kb on + strand, within Synpcc7942_0352 at 345.153 kb on + strand, within Synpcc7942_0352 at 345.163 kb on + strand, within Synpcc7942_0352 at 345.168 kb on + strand, within Synpcc7942_0352 at 345.170 kb on + strand, within Synpcc7942_0352 at 345.171 kb on - strand, within Synpcc7942_0352 at 345.176 kb on - strand, within Synpcc7942_0352 at 345.178 kb on - strand, within Synpcc7942_0352 at 345.203 kb on + strand, within Synpcc7942_0352 at 345.217 kb on + strand, within Synpcc7942_0352 at 345.220 kb on - strand, within Synpcc7942_0352 at 345.224 kb on - strand, within Synpcc7942_0352 at 345.226 kb on + strand, within Synpcc7942_0352 at 345.240 kb on - strand, within Synpcc7942_0352 at 345.281 kb on + strand, within Synpcc7942_0352 at 345.287 kb on + strand, within Synpcc7942_0352 at 345.292 kb on + strand, within Synpcc7942_0352 at 345.297 kb on + strand, within Synpcc7942_0352 at 345.301 kb on + strand, within Synpcc7942_0352 at 345.305 kb on - strand, within Synpcc7942_0352 at 345.372 kb on - strand at 345.388 kb on - strand at 345.403 kb on + strand at 345.403 kb on + strand at 345.403 kb on + strand at 345.411 kb on - strand at 345.438 kb on + strand at 345.441 kb on - strand at 345.451 kb on - strand at 345.458 kb on + strand at 345.476 kb on - strand at 345.519 kb on - strand at 345.552 kb on - strand at 345.578 kb on + strand, within Synpcc7942_0353 at 345.612 kb on + strand, within Synpcc7942_0353 at 345.612 kb on + strand, within Synpcc7942_0353 at 345.619 kb on - strand, within Synpcc7942_0353 at 345.634 kb on + strand, within Synpcc7942_0353 at 345.636 kb on - strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.688 kb on + strand, within Synpcc7942_0353 at 345.696 kb on - strand, within Synpcc7942_0353 at 345.696 kb on - strand, within Synpcc7942_0353 at 345.696 kb on - strand, within Synpcc7942_0353 at 345.696 kb on - strand, within Synpcc7942_0353 at 345.704 kb on + strand, within Synpcc7942_0353 at 345.704 kb on + strand, within Synpcc7942_0353 at 345.712 kb on - strand, within Synpcc7942_0353 at 345.712 kb on - strand, within Synpcc7942_0353 at 345.719 kb on + strand, within Synpcc7942_0353 at 345.726 kb on - strand, within Synpcc7942_0353 at 345.728 kb on + strand, within Synpcc7942_0353 at 345.728 kb on + strand, within Synpcc7942_0353 at 345.736 kb on - strand, within Synpcc7942_0353 at 345.774 kb on + strand, within Synpcc7942_0353 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.870 kb on + strand, within Synpcc7942_0353 at 345.909 kb on - strand at 345.933 kb on - strand, within Synpcc7942_0353 at 345.946 kb on - strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.962 kb on - strand, within Synpcc7942_0353 at 345.967 kb on + strand, within Synpcc7942_0353 at 345.976 kb on - strand, within Synpcc7942_0353 at 345.987 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.995 kb on - strand, within Synpcc7942_0353 at 346.000 kb on + strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.008 kb on - strand, within Synpcc7942_0353 at 346.010 kb on - strand, within Synpcc7942_0353 at 346.026 kb on + strand, within Synpcc7942_0353 at 346.043 kb on + strand, within Synpcc7942_0353 at 346.062 kb on + strand, within Synpcc7942_0353 at 346.072 kb on + strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.199 kb on + strand, within Synpcc7942_0353 at 346.275 kb on - strand, within Synpcc7942_0353 at 346.294 kb on + strand, within Synpcc7942_0353 at 346.390 kb on - strand at 346.489 kb on + strand at 346.627 kb on - strand at 346.627 kb on - strand at 346.639 kb on - strand at 346.809 kb on + strand at 346.824 kb on - strand at 346.901 kb on + strand at 346.909 kb on - strand at 346.909 kb on - strand at 346.974 kb on + strand at 347.007 kb on + strand, within bgl at 347.019 kb on - strand, within bgl at 347.123 kb on + strand, within bgl at 347.123 kb on + strand, within bgl at 347.227 kb on - strand, within bgl at 347.268 kb on + strand, within bgl at 347.275 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.279 kb on + strand, within bgl at 347.347 kb on + strand, within bgl
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 344,518 - ycf22 Synpcc7942_0351 0.72 +0.6 344,518 - ycf22 Synpcc7942_0351 0.72 -0.7 344,551 + ycf22 Synpcc7942_0351 0.75 +1.7 344,559 - ycf22 Synpcc7942_0351 0.76 +0.1 344,559 - ycf22 Synpcc7942_0351 0.76 -1.1 344,587 - ycf22 Synpcc7942_0351 0.78 -0.2 344,591 + ycf22 Synpcc7942_0351 0.79 +0.6 344,641 + ycf22 Synpcc7942_0351 0.83 -0.9 344,732 - -0.4 344,754 + +0.1 344,795 + +1.5 344,797 + +2.0 344,816 + -0.6 344,816 + -2.0 344,824 - -0.4 344,824 - -0.5 344,826 + +0.3 344,829 - +1.9 344,829 - +2.3 344,831 + -0.1 344,834 - -0.4 344,850 + +2.1 344,858 - +1.4 344,864 - -0.9 344,899 - Synpcc7942_0352 0.12 -1.2 344,904 + Synpcc7942_0352 0.13 -0.2 344,916 + Synpcc7942_0352 0.15 -1.0 344,924 + Synpcc7942_0352 0.17 -0.1 344,943 + Synpcc7942_0352 0.20 -1.2 344,943 + Synpcc7942_0352 0.20 +1.8 345,037 + Synpcc7942_0352 0.35 -1.2 345,045 - Synpcc7942_0352 0.36 -1.5 345,047 - Synpcc7942_0352 0.37 +2.2 345,061 + Synpcc7942_0352 0.39 -1.0 345,069 - Synpcc7942_0352 0.40 +1.4 345,085 + Synpcc7942_0352 0.43 +0.3 345,090 + Synpcc7942_0352 0.44 -0.9 345,134 + Synpcc7942_0352 0.51 -1.7 345,153 + Synpcc7942_0352 0.54 -0.2 345,163 + Synpcc7942_0352 0.56 -3.5 345,168 + Synpcc7942_0352 0.57 -0.5 345,170 + Synpcc7942_0352 0.57 -0.5 345,171 - Synpcc7942_0352 0.57 -1.2 345,176 - Synpcc7942_0352 0.58 +0.8 345,178 - Synpcc7942_0352 0.58 -0.4 345,203 + Synpcc7942_0352 0.62 -1.5 345,217 + Synpcc7942_0352 0.65 +1.3 345,220 - Synpcc7942_0352 0.65 -0.4 345,224 - Synpcc7942_0352 0.66 +1.2 345,226 + Synpcc7942_0352 0.66 +0.7 345,240 - Synpcc7942_0352 0.68 -0.8 345,281 + Synpcc7942_0352 0.75 +0.7 345,287 + Synpcc7942_0352 0.76 +0.2 345,292 + Synpcc7942_0352 0.77 +1.1 345,297 + Synpcc7942_0352 0.78 -2.7 345,301 + Synpcc7942_0352 0.78 +0.9 345,305 - Synpcc7942_0352 0.79 -0.4 345,372 - -0.9 345,388 - -2.4 345,403 + -0.9 345,403 + -1.6 345,403 + +0.8 345,411 - +1.7 345,438 + -1.2 345,441 - +1.1 345,451 - -3.9 345,458 + -0.9 345,476 - -0.5 345,519 - -0.6 345,552 - -1.6 345,578 + Synpcc7942_0353 0.11 -1.0 345,612 + Synpcc7942_0353 0.15 -0.9 345,612 + Synpcc7942_0353 0.15 -1.2 345,619 - Synpcc7942_0353 0.15 -1.1 345,634 + Synpcc7942_0353 0.17 -0.8 345,636 - Synpcc7942_0353 0.17 -2.1 345,688 + Synpcc7942_0353 0.23 +0.3 345,688 + Synpcc7942_0353 0.23 +0.5 345,688 + Synpcc7942_0353 0.23 -0.7 345,688 + Synpcc7942_0353 0.23 -1.3 345,688 + Synpcc7942_0353 0.23 -2.2 345,688 + Synpcc7942_0353 0.23 -3.0 345,696 - Synpcc7942_0353 0.23 -0.3 345,696 - Synpcc7942_0353 0.23 -1.3 345,696 - Synpcc7942_0353 0.23 -1.1 345,696 - Synpcc7942_0353 0.23 -1.5 345,704 + Synpcc7942_0353 0.24 +1.0 345,704 + Synpcc7942_0353 0.24 +0.3 345,712 - Synpcc7942_0353 0.25 -1.7 345,712 - Synpcc7942_0353 0.25 -0.2 345,719 + Synpcc7942_0353 0.26 -1.6 345,726 - Synpcc7942_0353 0.27 +0.2 345,728 + Synpcc7942_0353 0.27 -1.3 345,728 + Synpcc7942_0353 0.27 +0.9 345,736 - Synpcc7942_0353 0.28 -0.8 345,774 + Synpcc7942_0353 0.32 -3.4 345,836 - Synpcc7942_0353 0.38 -1.8 345,836 - Synpcc7942_0353 0.38 +0.2 345,870 + Synpcc7942_0353 0.42 -1.4 345,909 - +1.1 345,933 - Synpcc7942_0353 0.48 -1.1 345,946 - Synpcc7942_0353 0.49 -1.6 345,947 + Synpcc7942_0353 0.50 -1.6 345,947 + Synpcc7942_0353 0.50 +0.3 345,962 - Synpcc7942_0353 0.51 -1.3 345,967 + Synpcc7942_0353 0.52 +0.6 345,976 - Synpcc7942_0353 0.53 +0.2 345,987 + Synpcc7942_0353 0.54 +0.5 345,992 + Synpcc7942_0353 0.54 +1.0 345,992 + Synpcc7942_0353 0.54 -0.6 345,995 - Synpcc7942_0353 0.55 -4.3 346,000 + Synpcc7942_0353 0.55 +0.1 346,000 - Synpcc7942_0353 0.55 -1.9 346,000 - Synpcc7942_0353 0.55 +0.0 346,000 - Synpcc7942_0353 0.55 +1.2 346,000 - Synpcc7942_0353 0.55 +0.5 346,002 + Synpcc7942_0353 0.55 +0.5 346,002 + Synpcc7942_0353 0.55 -0.5 346,008 - Synpcc7942_0353 0.56 -1.7 346,010 - Synpcc7942_0353 0.56 -0.2 346,026 + Synpcc7942_0353 0.58 +0.7 346,043 + Synpcc7942_0353 0.60 -0.8 346,062 + Synpcc7942_0353 0.61 -0.8 346,072 + Synpcc7942_0353 0.63 -1.5 346,106 - Synpcc7942_0353 0.66 -0.5 346,106 - Synpcc7942_0353 0.66 -0.6 346,199 + Synpcc7942_0353 0.76 +1.2 346,275 - Synpcc7942_0353 0.84 -0.6 346,294 + Synpcc7942_0353 0.86 -0.6 346,390 - -0.9 346,489 + +0.3 346,627 - +1.2 346,627 - -1.1 346,639 - +2.4 346,809 + -0.0 346,824 - -0.2 346,901 + -1.3 346,909 - -0.7 346,909 - -1.1 346,974 + +0.2 347,007 + bgl Synpcc7942_0354 0.11 +0.4 347,019 - bgl Synpcc7942_0354 0.11 -0.6 347,123 + bgl Synpcc7942_0354 0.18 -1.4 347,123 + bgl Synpcc7942_0354 0.18 -0.2 347,227 - bgl Synpcc7942_0354 0.24 -0.3 347,268 + bgl Synpcc7942_0354 0.27 -2.4 347,275 - bgl Synpcc7942_0354 0.27 -1.6 347,276 - bgl Synpcc7942_0354 0.27 -0.3 347,276 - bgl Synpcc7942_0354 0.27 -1.0 347,279 + bgl Synpcc7942_0354 0.27 -0.7 347,347 + bgl Synpcc7942_0354 0.32 -0.1
Or see this region's nucleotide sequence