Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5004

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5003 and Psyr_5004 are separated by 121 nucleotidesPsyr_5004 and Psyr_5005 are separated by 59 nucleotides Psyr_5003: Psyr_5003 - MscS Mechanosensitive ion channel, at 5,933,543 to 5,934,343 _5003 Psyr_5004: Psyr_5004 - chemotaxis sensory transducer, at 5,934,465 to 5,936,483 _5004 Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108 _5005 Position (kb) 5934 5935 5936 5937Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.486 kb on - strandat 5933.523 kb on - strandat 5933.523 kb on - strandat 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.948 kb on - strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.264 kb on - strandat 5934.281 kb on + strandat 5934.281 kb on + strandat 5934.282 kb on - strandat 5934.282 kb on - strandat 5934.354 kb on + strandat 5934.408 kb on + strandat 5934.409 kb on - strandat 5934.409 kb on - strandat 5934.452 kb on + strandat 5934.460 kb on + strandat 5934.460 kb on + strandat 5934.461 kb on - strandat 5934.475 kb on + strandat 5934.475 kb on + strandat 5934.475 kb on + strandat 5934.476 kb on - strandat 5934.476 kb on - strandat 5934.476 kb on - strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.582 kb on + strandat 5934.582 kb on + strandat 5934.583 kb on - strandat 5934.714 kb on + strand, within Psyr_5004at 5934.715 kb on - strand, within Psyr_5004at 5934.715 kb on - strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.794 kb on - strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.931 kb on - strand, within Psyr_5004at 5934.985 kb on - strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.318 kb on - strand, within Psyr_5004at 5935.318 kb on - strand, within Psyr_5004at 5935.377 kb on + strand, within Psyr_5004at 5935.377 kb on + strand, within Psyr_5004at 5935.377 kb on + strand, within Psyr_5004at 5935.378 kb on - strand, within Psyr_5004at 5935.378 kb on - strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5936.481 kb on + strandat 5936.506 kb on + strandat 5936.507 kb on - strandat 5936.507 kb on - strandat 5936.545 kb on - strandat 5936.641 kb on - strandat 5936.641 kb on - strandat 5936.909 kb on - strand, within Psyr_5005at 5937.085 kb on + strand, within Psyr_5005at 5937.093 kb on + strand, within Psyr_5005at 5937.093 kb on + strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.103 kb on - strand, within Psyr_5005at 5937.103 kb on - strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.359 kb on - strand, within Psyr_5005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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5,933,485 + -0.3
5,933,485 + -1.0
5,933,485 + -1.3
5,933,485 + -0.2
5,933,486 - -2.2
5,933,523 - +0.1
5,933,523 - -2.2
5,933,748 - Psyr_5003 0.26 +3.7
5,933,748 - Psyr_5003 0.26 -1.9
5,933,748 - Psyr_5003 0.26 +1.5
5,933,748 - Psyr_5003 0.26 -0.5
5,933,748 - Psyr_5003 0.26 -0.1
5,933,779 + Psyr_5003 0.29 +0.2
5,933,779 + Psyr_5003 0.29 -1.5
5,933,779 + Psyr_5003 0.29 +0.9
5,933,779 + Psyr_5003 0.29 +1.5
5,933,779 + Psyr_5003 0.29 +0.9
5,933,779 + Psyr_5003 0.29 -0.5
5,933,779 + Psyr_5003 0.29 -0.9
5,933,779 + Psyr_5003 0.29 +0.3
5,933,780 - Psyr_5003 0.30 -0.1
5,933,780 - Psyr_5003 0.30 -0.1
5,933,780 - Psyr_5003 0.30 +1.0
5,933,780 - Psyr_5003 0.30 -1.3
5,933,780 - Psyr_5003 0.30 +0.4
5,933,807 + Psyr_5003 0.33 -0.5
5,933,807 + Psyr_5003 0.33 +0.3
5,933,807 + Psyr_5003 0.33 +1.2
5,933,807 + Psyr_5003 0.33 -0.7
5,933,808 - Psyr_5003 0.33 -0.0
5,933,808 - Psyr_5003 0.33 +0.3
5,933,808 - Psyr_5003 0.33 -1.0
5,933,808 - Psyr_5003 0.33 -1.4
5,933,948 - Psyr_5003 0.51 +0.1
5,934,189 + Psyr_5003 0.81 +1.5
5,934,189 + Psyr_5003 0.81 +1.5
5,934,189 + Psyr_5003 0.81 -1.0
5,934,189 + Psyr_5003 0.81 +0.7
5,934,189 + Psyr_5003 0.81 -1.0
5,934,189 + Psyr_5003 0.81 +0.2
5,934,190 - Psyr_5003 0.81 +0.1
5,934,190 - Psyr_5003 0.81 -1.8
5,934,190 - Psyr_5003 0.81 +1.0
5,934,190 - Psyr_5003 0.81 -1.5
5,934,190 - Psyr_5003 0.81 -0.9
5,934,190 - Psyr_5003 0.81 +0.9
5,934,190 - Psyr_5003 0.81 +0.7
5,934,264 - -1.3
5,934,281 + -1.8
5,934,281 + -0.6
5,934,282 - -0.5
5,934,282 - +0.9
5,934,354 + +1.3
5,934,408 + -1.0
5,934,409 - +0.0
5,934,409 - +0.8
5,934,452 + +0.1
5,934,460 + +0.3
5,934,460 + +0.4
5,934,461 - +0.3
5,934,475 + -0.5
5,934,475 + +0.0
5,934,475 + -0.6
5,934,476 - -0.0
5,934,476 - -1.0
5,934,476 - -0.3
5,934,527 + -0.0
5,934,527 + -3.0
5,934,527 + -0.4
5,934,527 + -2.9
5,934,527 + -2.9
5,934,528 - -2.0
5,934,528 - +0.2
5,934,528 - +0.8
5,934,528 - -0.1
5,934,528 - +0.8
5,934,528 - -2.6
5,934,582 + -0.5
5,934,582 + -1.8
5,934,583 - +0.7
5,934,714 + Psyr_5004 0.12 +1.0
5,934,715 - Psyr_5004 0.12 +1.5
5,934,715 - Psyr_5004 0.12 +2.0
5,934,793 + Psyr_5004 0.16 -0.6
5,934,793 + Psyr_5004 0.16 -0.6
5,934,793 + Psyr_5004 0.16 +0.3
5,934,793 + Psyr_5004 0.16 -0.2
5,934,794 - Psyr_5004 0.16 +0.7
5,934,930 + Psyr_5004 0.23 +0.3
5,934,930 + Psyr_5004 0.23 +2.5
5,934,930 + Psyr_5004 0.23 +0.1
5,934,931 - Psyr_5004 0.23 +1.1
5,934,985 - Psyr_5004 0.26 +1.7
5,935,209 + Psyr_5004 0.37 +0.4
5,935,209 + Psyr_5004 0.37 +0.5
5,935,209 + Psyr_5004 0.37 -1.0
5,935,209 + Psyr_5004 0.37 +0.5
5,935,209 + Psyr_5004 0.37 -0.2
5,935,209 + Psyr_5004 0.37 -2.8
5,935,209 + Psyr_5004 0.37 +0.9
5,935,209 + Psyr_5004 0.37 +0.0
5,935,210 - Psyr_5004 0.37 -0.1
5,935,210 - Psyr_5004 0.37 +2.1
5,935,210 - Psyr_5004 0.37 -0.1
5,935,210 - Psyr_5004 0.37 -0.5
5,935,210 - Psyr_5004 0.37 -0.0
5,935,210 - Psyr_5004 0.37 +1.4
5,935,210 - Psyr_5004 0.37 -2.4
5,935,318 - Psyr_5004 0.42 +1.1
5,935,318 - Psyr_5004 0.42 +1.1
5,935,377 + Psyr_5004 0.45 +1.9
5,935,377 + Psyr_5004 0.45 +0.3
5,935,377 + Psyr_5004 0.45 -0.3
5,935,378 - Psyr_5004 0.45 +0.8
5,935,378 - Psyr_5004 0.45 +2.5
5,935,710 + Psyr_5004 0.62 -0.5
5,935,710 + Psyr_5004 0.62 -3.7
5,935,710 + Psyr_5004 0.62 +0.3
5,935,710 + Psyr_5004 0.62 -1.7
5,935,710 + Psyr_5004 0.62 -0.5
5,935,711 - Psyr_5004 0.62 +1.3
5,935,711 - Psyr_5004 0.62 +0.9
5,935,711 - Psyr_5004 0.62 +1.8
5,935,711 - Psyr_5004 0.62 -0.1
5,936,481 + -0.9
5,936,506 + -1.2
5,936,507 - +2.1
5,936,507 - +2.3
5,936,545 - +0.5
5,936,641 - +1.1
5,936,641 - +0.3
5,936,909 - Psyr_5005 0.23 -1.0
5,937,085 + Psyr_5005 0.35 -1.0
5,937,093 + Psyr_5005 0.35 +0.8
5,937,093 + Psyr_5005 0.35 -0.3
5,937,094 - Psyr_5005 0.35 -1.0
5,937,094 - Psyr_5005 0.35 -0.2
5,937,094 - Psyr_5005 0.35 -0.6
5,937,103 - Psyr_5005 0.36 +0.8
5,937,103 - Psyr_5005 0.36 +0.1
5,937,201 + Psyr_5005 0.42 +2.1
5,937,201 + Psyr_5005 0.42 +0.7
5,937,201 + Psyr_5005 0.42 -1.5
5,937,201 + Psyr_5005 0.42 +1.4
5,937,201 + Psyr_5005 0.42 -2.5
5,937,202 - Psyr_5005 0.42 +0.1
5,937,202 - Psyr_5005 0.42 -0.8
5,937,202 - Psyr_5005 0.42 -1.1
5,937,202 - Psyr_5005 0.42 +2.0
5,937,337 - Psyr_5005 0.51 -1.7
5,937,337 - Psyr_5005 0.51 -0.5
5,937,337 - Psyr_5005 0.51 +1.2
5,937,359 - Psyr_5005 0.52 -1.0

Or see this region's nucleotide sequence