Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4927

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
5,839,835	+		Psyr_4925	0.58	+1.1
5,839,835	+		Psyr_4925	0.58	+2.9
5,839,835	+		Psyr_4925	0.58	+0.4
5,839,835	+		Psyr_4925	0.58	+1.0
5,839,835	+		Psyr_4925	0.58	+0.5
5,839,835	+		Psyr_4925	0.58	+1.7
5,839,835	+		Psyr_4925	0.58	+1.6
5,839,836	-		Psyr_4925	0.58	+1.1
5,839,836	-		Psyr_4925	0.58	-0.9
5,839,836	-		Psyr_4925	0.58	+0.8
5,839,836	-		Psyr_4925	0.58	+0.4
5,839,836	-		Psyr_4925	0.58	+0.0
5,839,836	-		Psyr_4925	0.58	+0.5
5,839,836	-		Psyr_4925	0.58	+1.6
5,839,836	-		Psyr_4925	0.58	-1.8
5,839,877	+		Psyr_4925	0.63	+0.3
5,839,935	+		Psyr_4925	0.71	-0.3
5,839,935	+		Psyr_4925	0.71	-2.1
5,839,936	-		Psyr_4925	0.71	+1.5
5,839,936	-		Psyr_4925	0.71	-0.5
5,839,936	-		Psyr_4925	0.71	+0.5
5,839,947	+		Psyr_4925	0.73	+0.8
5,839,948	-		Psyr_4925	0.73	-0.3
5,840,064	+		Psyr_4925	0.89	+0.9
5,840,064	+		Psyr_4925	0.89	+0.2
5,840,065	-		Psyr_4925	0.89	-2.2
5,840,065	-		Psyr_4925	0.89	-0.4
5,840,065	-		Psyr_4925	0.89	-1.1
5,840,190	+				+0.1
5,840,190	+				+0.2
5,840,190	+				+2.1
5,840,190	+				+0.5
5,840,191	-				-0.9
5,840,193	+				+1.2
5,840,193	+				-1.3
5,840,193	+				+0.5
5,840,193	+				+0.5
5,840,193	+				-0.0
5,840,193	+				-0.0
5,840,193	+				-0.6
5,840,193	+				+2.7
5,840,193	+				+1.1
5,840,193	+				+1.0
5,840,193	+				-2.1
5,840,193	+				-0.2
5,840,193	+				-0.3
5,840,193	+				-0.2
5,840,193	+				+3.1
5,840,193	+				+1.9
5,840,193	+				-0.7
5,840,193	+				+0.8
5,840,193	+				-1.1
5,840,193	+				+1.9
5,840,193	+				-1.1
5,840,194	-				+0.5
5,840,194	-				-0.5
5,840,194	-				+0.7
5,840,194	-				-0.3
5,840,194	-				-0.5
5,840,194	-				-1.4
5,840,194	-				-1.1
5,840,194	-				+1.1
5,840,194	-				+1.0
5,840,194	-				-0.0
5,840,194	-				-0.4
5,840,194	-				+0.1
5,840,194	-				+1.8
5,840,241	+		Psyr_4926	0.17	-0.1
5,840,241	+		Psyr_4926	0.17	+0.2
5,840,241	+		Psyr_4926	0.17	+1.2
5,840,241	+		Psyr_4926	0.17	-0.2
5,840,241	+		Psyr_4926	0.17	-2.1
5,840,241	+		Psyr_4926	0.17	-2.1
5,840,241	+		Psyr_4926	0.17	+0.1
5,840,242	-		Psyr_4926	0.18	-0.8
5,840,242	-		Psyr_4926	0.18	-1.5
5,840,242	-		Psyr_4926	0.18	+0.7
5,840,242	-		Psyr_4926	0.18	-1.5
5,840,283	-		Psyr_4926	0.26	-2.1
5,840,283	-		Psyr_4926	0.26	-2.2
5,840,370	+		Psyr_4926	0.45	+2.5
5,840,370	+		Psyr_4926	0.45	+1.1
5,840,370	+		Psyr_4926	0.45	+0.3
5,840,370	+		Psyr_4926	0.45	-0.3
5,840,371	-		Psyr_4926	0.45	+1.2
5,840,371	-		Psyr_4926	0.45	-0.2
5,840,371	-		Psyr_4926	0.45	+0.5
5,840,448	+		Psyr_4926	0.61	-0.3
5,840,448	+		Psyr_4926	0.61	+0.1
5,840,448	+		Psyr_4926	0.61	+0.5
5,840,448	+		Psyr_4926	0.61	+0.3
5,840,448	+		Psyr_4926	0.61	+0.6
5,840,448	+		Psyr_4926	0.61	-1.7
5,840,448	+		Psyr_4926	0.61	+0.5
5,840,448	+		Psyr_4926	0.61	+0.1
5,840,448	+		Psyr_4926	0.61	+1.2
5,840,448	+		Psyr_4926	0.61	-0.4
5,840,448	+		Psyr_4926	0.61	+0.1
5,840,448	+		Psyr_4926	0.61	-1.0
5,840,448	+		Psyr_4926	0.61	-0.2
5,840,448	+		Psyr_4926	0.61	+0.6
5,840,448	+		Psyr_4926	0.61	-0.2
5,840,448	+		Psyr_4926	0.61	-0.5
5,840,448	+		Psyr_4926	0.61	-0.1
5,840,448	+		Psyr_4926	0.61	+0.5
5,840,448	+		Psyr_4926	0.61	+0.6
5,840,448	+		Psyr_4926	0.61	-0.1
5,840,448	+		Psyr_4926	0.61	+1.0
5,840,448	+		Psyr_4926	0.61	-1.1
5,840,448	+		Psyr_4926	0.61	+0.5
5,840,448	+		Psyr_4926	0.61	+1.0
5,840,448	+		Psyr_4926	0.61	+0.2
5,840,449	-		Psyr_4926	0.61	-0.5
5,840,449	-		Psyr_4926	0.61	-0.7
5,840,449	-		Psyr_4926	0.61	-1.3
5,840,449	-		Psyr_4926	0.61	+0.7
5,840,449	-		Psyr_4926	0.61	-0.2
5,840,449	-		Psyr_4926	0.61	-0.2
5,840,449	-		Psyr_4926	0.61	+0.5
5,840,449	-		Psyr_4926	0.61	+0.2
5,840,449	-		Psyr_4926	0.61	+0.5
5,840,449	-		Psyr_4926	0.61	+0.3
5,840,449	-		Psyr_4926	0.61	-1.5
5,840,449	-		Psyr_4926	0.61	+2.2
5,840,449	-		Psyr_4926	0.61	-0.7
5,840,449	-		Psyr_4926	0.61	+1.3
5,840,449	-		Psyr_4926	0.61	-0.5
5,840,449	-		Psyr_4926	0.61	-1.3
5,840,449	-		Psyr_4926	0.61	+1.5
5,840,449	-		Psyr_4926	0.61	+0.1
5,840,449	-		Psyr_4926	0.61	-2.8
5,840,449	-		Psyr_4926	0.61	+0.7
5,840,449	-		Psyr_4926	0.61	-2.1
5,840,449	-		Psyr_4926	0.61	+1.0
5,840,449	-		Psyr_4926	0.61	+0.5
5,840,449	-		Psyr_4926	0.61	+1.1
5,840,449	-		Psyr_4926	0.61	+0.5
5,840,449	-		Psyr_4926	0.61	+0.4
5,840,449	-		Psyr_4926	0.61	-1.3
5,840,449	-		Psyr_4926	0.61	-0.7
5,840,449	-		Psyr_4926	0.61	+0.2
5,840,548	+		Psyr_4926	0.82	-1.3
5,840,548	+		Psyr_4926	0.82	+0.9
5,840,552	+		Psyr_4926	0.83	+0.9
5,840,552	+		Psyr_4926	0.83	-1.5
5,840,552	+		Psyr_4926	0.83	+1.2
5,840,553	-		Psyr_4926	0.83	-0.8
5,840,553	-		Psyr_4926	0.83	+0.5
5,840,553	-		Psyr_4926	0.83	+1.3
5,840,553	-		Psyr_4926	0.83	+1.8
5,840,553	-		Psyr_4926	0.83	+0.1
5,840,618	+				-2.3
5,840,618	+				+1.2
5,840,694	+				-0.4
5,840,694	+				-0.0
5,840,694	+				-0.3
5,840,694	+				-0.0
5,840,694	+				-0.8
5,840,694	+				+1.6
5,840,694	+				-0.2
5,840,694	+				-0.2
5,840,695	-				-0.5
5,840,695	-				-0.0
5,840,695	-				-0.1
5,840,695	-				-0.9
5,840,695	-				-1.1
5,840,695	-				-0.5
5,840,695	-				+1.0
5,840,695	-				+1.0
5,840,747	+				+0.6
5,840,854	+		Psyr_4927	0.21	+0.5
5,840,854	+		Psyr_4927	0.21	+1.3
5,840,854	+		Psyr_4927	0.21	+0.7
5,840,854	+		Psyr_4927	0.21	+2.8
5,840,855	-		Psyr_4927	0.21	+0.6
5,840,862	-		Psyr_4927	0.23	+3.3
5,840,928	+		Psyr_4927	0.34	+0.6
5,840,928	+		Psyr_4927	0.34	-1.3
5,840,929	-		Psyr_4927	0.34	+0.5
5,840,929	-		Psyr_4927	0.34	+0.1
5,840,996	+		Psyr_4927	0.45	-1.2
5,841,032	+		Psyr_4927	0.51	-0.2
5,841,034	+		Psyr_4927	0.51	+0.8
5,841,035	-		Psyr_4927	0.52	-2.7
5,841,080	+		Psyr_4927	0.59	+1.9
5,841,080	+		Psyr_4927	0.59	-0.3
5,841,080	+		Psyr_4927	0.59	-2.3
5,841,080	+		Psyr_4927	0.59	-1.8
5,841,081	-		Psyr_4927	0.59	+0.6
5,841,081	-		Psyr_4927	0.59	+0.8
5,841,081	-		Psyr_4927	0.59	-1.0
5,841,081	-		Psyr_4927	0.59	+0.6
5,841,081	-		Psyr_4927	0.59	-1.1
5,841,081	-		Psyr_4927	0.59	-0.4
5,841,084	+		Psyr_4927	0.60	-1.5
5,841,084	+		Psyr_4927	0.60	-0.3
5,841,084	+		Psyr_4927	0.60	+1.3
5,841,084	+		Psyr_4927	0.60	+1.5
5,841,085	-		Psyr_4927	0.60	-0.1
5,841,085	-		Psyr_4927	0.60	+0.7
5,841,085	-		Psyr_4927	0.60	-1.1
5,841,085	-		Psyr_4927	0.60	+1.3
5,841,112	+		Psyr_4927	0.64	-1.1
5,841,112	+		Psyr_4927	0.64	-1.8
5,841,112	+		Psyr_4927	0.64	-0.0
5,841,112	+		Psyr_4927	0.64	-0.1
5,841,113	-		Psyr_4927	0.65	-1.8
5,841,113	-		Psyr_4927	0.65	-0.5
5,841,113	-		Psyr_4927	0.65	+2.7
5,841,113	-		Psyr_4927	0.65	+0.5
5,841,113	-		Psyr_4927	0.65	+0.1
5,841,113	-		Psyr_4927	0.65	+1.8
5,841,124	+		Psyr_4927	0.66	-0.5
5,841,124	+		Psyr_4927	0.66	+1.3
5,841,164	+		Psyr_4927	0.73	+0.5
5,841,164	+		Psyr_4927	0.73	+0.2
5,841,164	+		Psyr_4927	0.73	+1.3
5,841,164	+		Psyr_4927	0.73	-1.1
5,841,164	+		Psyr_4927	0.73	-0.1
5,841,165	-		Psyr_4927	0.73	+1.2
5,841,165	-		Psyr_4927	0.73	+0.5
5,841,165	-		Psyr_4927	0.73	+1.3
5,841,249	+		Psyr_4927	0.87	-2.3
5,841,249	+		Psyr_4927	0.87	-1.5
5,841,250	-		Psyr_4927	0.88	-0.4
5,841,250	-		Psyr_4927	0.88	+0.2
5,841,250	-		Psyr_4927	0.88	+1.9
5,841,250	-		Psyr_4927	0.88	-1.8
5,841,277	+				+1.3
5,841,277	+				+1.2
5,841,278	-				+0.2
5,841,278	-				-1.3
5,841,315	+				-0.7
5,841,315	+				+0.5
5,841,315	+				-0.6
5,841,315	+				-0.8
5,841,315	+				-0.9
5,841,315	+				-0.4
5,841,316	-				+0.3
5,841,316	-				+0.3
5,841,316	-				+0.1
5,841,316	-				+0.1
5,841,316	-				-1.5
5,841,316	-				+0.0
5,841,317	+				-0.8
5,841,332	-				-0.4
5,841,339	+				+1.1
5,841,339	+				+0.2
5,841,339	+				-0.6
5,841,340	-				-0.9
5,841,340	-				-2.3
5,841,340	-				+1.5
5,841,340	-				-1.2
5,841,340	-				-1.5
5,841,368	+				+0.5
5,841,611	+		Psyr_4928	0.41	+2.7
5,841,748	+		Psyr_4928	0.65	-0.9
5,841,749	-		Psyr_4928	0.65	+0.2
5,841,776	+		Psyr_4928	0.70	-0.5
5,841,776	+		Psyr_4928	0.70	-1.1
5,841,777	-		Psyr_4928	0.70	+0.3
5,841,777	-		Psyr_4928	0.70	+0.3
5,841,777	-		Psyr_4928	0.70	-0.3
5,841,828	-		Psyr_4928	0.78	-1.2
5,841,985	+				-2.1
5,841,985	+				+0.3
5,841,985	+				+1.1
5,841,998	+				+1.7
5,841,999	-				-3.0
5,842,043	+				-0.6
5,842,043	+				+3.1
5,842,044	-				+0.8
5,842,044	-				-0.0
5,842,044	-				-2.8
5,842,045	+				+0.4
5,842,045	+				+0.5
5,842,045	+				+1.4
5,842,046	-				+0.4
5,842,046	-				-1.1
5,842,046	-				-0.2
5,842,208	+		Psyr_4929	0.18	+0.6
5,842,208	+		Psyr_4929	0.18	+1.3
5,842,209	-		Psyr_4929	0.19	+0.9
5,842,209	-		Psyr_4929	0.19	-2.1
5,842,209	-		Psyr_4929	0.19	-0.8
5,842,236	+		Psyr_4929	0.24	+0.0
5,842,236	+		Psyr_4929	0.24	-0.4
5,842,236	+		Psyr_4929	0.24	-0.5
5,842,237	-		Psyr_4929	0.25	+0.2
5,842,241	+		Psyr_4929	0.25	+0.1
5,842,242	-		Psyr_4929	0.26	+0.1
5,842,242	-		Psyr_4929	0.26	+0.3
5,842,242	-		Psyr_4929	0.26	-0.6
5,842,242	-		Psyr_4929	0.26	-2.3
5,842,242	-		Psyr_4929	0.26	-0.7
5,842,242	-		Psyr_4929	0.26	-2.1
5,842,242	-		Psyr_4929	0.26	-0.7
5,842,288	+		Psyr_4929	0.35	+0.8
5,842,289	-		Psyr_4929	0.36	-0.2