Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4923

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
5,835,659	+				+0.2
5,835,659	+				+1.2
5,835,659	+				+0.8
5,835,659	+				+0.6
5,835,659	+				+1.2
5,835,659	+				-0.5
5,835,659	+				-2.6
5,835,659	+				-1.7
5,835,659	+				+0.6
5,835,659	+				-1.0
5,835,659	+				-0.2
5,835,659	+				-2.8
5,835,659	+				+0.5
5,835,660	-				-0.3
5,835,660	-				+1.5
5,835,660	-				+0.5
5,835,660	-				-1.2
5,835,660	-				+0.5
5,835,660	-				+0.3
5,835,680	-				+0.1
5,835,680	-				+0.1
5,835,680	-				+0.8
5,835,680	-				+2.7
5,835,712	+				+0.5
5,835,712	+				+0.8
5,835,713	-				+1.0
5,835,756	+				+0.7
5,835,756	+				+0.2
5,835,757	-				-0.5
5,835,757	-				-0.4
5,835,757	-				+0.5
5,835,757	-				+0.2
5,835,769	+		Psyr_4922	0.11	-0.9
5,835,769	+		Psyr_4922	0.11	-0.4
5,835,769	+		Psyr_4922	0.11	+0.0
5,835,769	+		Psyr_4922	0.11	+0.9
5,835,770	-		Psyr_4922	0.11	+1.4
5,835,770	-		Psyr_4922	0.11	-1.5
5,835,770	-		Psyr_4922	0.11	-2.3
5,835,773	+		Psyr_4922	0.12	+1.4
5,835,773	+		Psyr_4922	0.12	+1.2
5,835,773	+		Psyr_4922	0.12	-0.6
5,835,773	+		Psyr_4922	0.12	+0.2
5,835,773	+		Psyr_4922	0.12	-1.1
5,835,773	+		Psyr_4922	0.12	-2.1
5,835,773	+		Psyr_4922	0.12	-2.1
5,835,773	+		Psyr_4922	0.12	+0.2
5,835,773	+		Psyr_4922	0.12	-1.7
5,835,773	+		Psyr_4922	0.12	+0.5
5,835,773	+		Psyr_4922	0.12	+0.5
5,835,773	+		Psyr_4922	0.12	+0.5
5,835,773	+		Psyr_4922	0.12	+0.8
5,835,774	-		Psyr_4922	0.12	-0.5
5,835,774	-		Psyr_4922	0.12	+2.3
5,835,774	-		Psyr_4922	0.12	-0.1
5,835,774	-		Psyr_4922	0.12	-2.8
5,835,774	-		Psyr_4922	0.12	-0.0
5,835,774	-		Psyr_4922	0.12	-1.3
5,835,774	-		Psyr_4922	0.12	+2.5
5,835,774	-		Psyr_4922	0.12	+1.1
5,835,820	+		Psyr_4922	0.18	+0.7
5,835,821	-		Psyr_4922	0.18	+1.1
5,835,821	-		Psyr_4922	0.18	-1.0
5,835,821	-		Psyr_4922	0.18	-1.2
5,835,843	+		Psyr_4922	0.21	-0.8
5,835,857	-		Psyr_4922	0.23	-1.5
5,835,908	+		Psyr_4922	0.30	-1.5
5,835,909	-		Psyr_4922	0.30	-0.8
5,835,909	-		Psyr_4922	0.30	+1.1
5,835,914	+		Psyr_4922	0.31	-0.4
5,835,914	+		Psyr_4922	0.31	-0.5
5,835,914	+		Psyr_4922	0.31	+0.8
5,835,915	-		Psyr_4922	0.31	+1.3
5,835,915	-		Psyr_4922	0.31	-1.8
5,835,937	+		Psyr_4922	0.34	+0.3
5,835,938	-		Psyr_4922	0.34	-0.5
5,835,959	+		Psyr_4922	0.37	-0.6
5,835,959	+		Psyr_4922	0.37	-1.5
5,835,959	+		Psyr_4922	0.37	+0.5
5,835,959	+		Psyr_4922	0.37	+1.0
5,835,959	+		Psyr_4922	0.37	+0.1
5,835,959	+		Psyr_4922	0.37	-0.6
5,835,959	+		Psyr_4922	0.37	-0.5
5,835,960	-		Psyr_4922	0.37	-0.7
5,835,960	-		Psyr_4922	0.37	+0.2
5,835,960	-		Psyr_4922	0.37	-0.2
5,835,960	-		Psyr_4922	0.37	+1.5
5,835,984	+		Psyr_4922	0.40	+0.7
5,835,984	+		Psyr_4922	0.40	+0.5
5,835,984	+		Psyr_4922	0.40	-0.9
5,835,984	+		Psyr_4922	0.40	+0.1
5,835,985	-		Psyr_4922	0.40	-1.6
5,835,985	-		Psyr_4922	0.40	-1.0
5,835,985	-		Psyr_4922	0.40	+0.4
5,836,030	+		Psyr_4922	0.46	-1.8
5,836,030	+		Psyr_4922	0.46	+0.3
5,836,086	+		Psyr_4922	0.54	-1.8
5,836,086	+		Psyr_4922	0.54	+1.0
5,836,087	-		Psyr_4922	0.54	-2.0
5,836,087	-		Psyr_4922	0.54	-0.4
5,836,087	-		Psyr_4922	0.54	-1.0
5,836,087	-		Psyr_4922	0.54	+0.5
5,836,087	-		Psyr_4922	0.54	+1.0
5,836,164	-		Psyr_4922	0.64	+0.8
5,836,288	+		Psyr_4922	0.81	+0.2
5,836,288	+		Psyr_4922	0.81	+0.6
5,836,288	+		Psyr_4922	0.81	-1.9
5,836,289	-		Psyr_4922	0.81	-0.7
5,836,289	-		Psyr_4922	0.81	+0.7
5,836,408	+				-0.4
5,836,408	+				+0.5
5,836,408	+				-0.5
5,836,408	+				-3.1
5,836,421	+				-0.1
5,836,421	+				+0.6
5,836,421	+				+0.5
5,836,422	-				-0.7
5,836,422	-				-1.8
5,836,422	-				-0.5
5,836,434	+				-0.3
5,836,434	+				+2.8
5,836,434	+				+0.5
5,836,434	+				-0.0
5,836,434	+				+0.8
5,836,434	+				-0.1
5,836,434	+				+2.3
5,836,434	+				-0.3
5,836,434	+				-0.9
5,836,434	+				+0.9
5,836,434	+				-1.1
5,836,434	+				+0.9
5,836,434	+				-2.3
5,836,434	+				+1.0
5,836,434	+				-0.5
5,836,435	-				-1.3
5,836,435	-				-2.8
5,836,435	-				+0.9
5,836,435	-				-0.8
5,836,435	-				+1.6
5,836,435	-				+3.3
5,836,435	-				-0.7
5,836,435	-				-2.8
5,836,446	+				+0.5
5,836,446	+				-0.1
5,836,447	-				-0.4
5,836,488	+				-0.5
5,836,488	+				-1.7
5,836,488	+				-1.1
5,836,488	+				-0.5
5,836,488	+				+1.1
5,836,488	+				+1.8
5,836,488	+				-0.3
5,836,488	+				-0.1
5,836,488	+				-1.7
5,836,489	-				-0.8
5,836,489	-				+0.4
5,836,489	-				+1.4
5,836,489	-				+0.4
5,836,489	-				-0.1
5,836,489	-				-0.5
5,836,489	-				+1.5
5,836,489	-				-2.5
5,836,489	-				+0.5
5,836,489	-				+0.6
5,836,492	+				+1.1
5,836,493	-				-2.3
5,836,493	-				-1.5
5,836,493	-				-1.1
5,836,493	-				+0.7
5,836,493	-				+0.5
5,836,493	-				-3.8
5,836,493	-				+0.3
5,836,513	-				-0.3
5,836,513	-				+2.8
5,836,580	-				-0.5
5,836,597	+				+1.8
5,836,598	-				-1.8
5,836,616	+				+0.1
5,836,616	+				+0.3
5,836,616	+				-0.2
5,836,617	-				-1.8
5,836,617	-				-0.5
5,836,617	-				-0.6
5,836,642	+		Psyr_4923	0.10	-0.5
5,836,642	+		Psyr_4923	0.10	-0.6
5,836,643	-		Psyr_4923	0.10	-0.1
5,836,643	-		Psyr_4923	0.10	+1.7
5,836,643	-		Psyr_4923	0.10	-1.1
5,836,643	-		Psyr_4923	0.10	-1.8
5,836,643	-		Psyr_4923	0.10	+1.1
5,836,643	-		Psyr_4923	0.10	-2.8
5,836,643	-		Psyr_4923	0.10	+0.5
5,836,643	-		Psyr_4923	0.10	-0.8
5,836,643	-		Psyr_4923	0.10	+1.6
5,836,643	-		Psyr_4923	0.10	+0.3
5,836,643	-		Psyr_4923	0.10	+0.1
5,836,643	-		Psyr_4923	0.10	-0.9
5,836,648	+		Psyr_4923	0.11	-1.8
5,836,648	+		Psyr_4923	0.11	-1.6
5,836,648	+		Psyr_4923	0.11	+0.9
5,836,648	+		Psyr_4923	0.11	+0.3
5,836,672	-		Psyr_4923	0.13	-0.1
5,836,758	+		Psyr_4923	0.23	-1.1
5,836,761	+		Psyr_4923	0.23	+0.1
5,836,762	-		Psyr_4923	0.23	-0.8
5,836,778	+		Psyr_4923	0.25	-0.5
5,836,906	+		Psyr_4923	0.39	+0.8
5,836,953	+		Psyr_4923	0.45	+1.5
5,836,953	+		Psyr_4923	0.45	+1.3
5,836,964	-		Psyr_4923	0.46	-1.5
5,836,978	+		Psyr_4923	0.47	-1.1
5,836,979	-		Psyr_4923	0.47	-0.3
5,836,994	+		Psyr_4923	0.49	-0.0
5,836,995	-		Psyr_4923	0.49	-1.6
5,837,035	+		Psyr_4923	0.54	-1.4
5,837,035	+		Psyr_4923	0.54	-1.1
5,837,073	+		Psyr_4923	0.58	+0.7
5,837,073	+		Psyr_4923	0.58	+0.1
5,837,074	-		Psyr_4923	0.58	-2.3
5,837,077	+		Psyr_4923	0.58	-1.1
5,837,077	+		Psyr_4923	0.58	+0.5
5,837,078	-		Psyr_4923	0.58	-0.7
5,837,136	+		Psyr_4923	0.65	+0.8
5,837,136	+		Psyr_4923	0.65	-0.5
5,837,136	+		Psyr_4923	0.65	-0.8
5,837,136	+		Psyr_4923	0.65	+1.2
5,837,136	+		Psyr_4923	0.65	-2.1
5,837,136	+		Psyr_4923	0.65	-0.0
5,837,136	+		Psyr_4923	0.65	-0.9
5,837,136	+		Psyr_4923	0.65	+0.7
5,837,136	+		Psyr_4923	0.65	-0.5
5,837,137	-		Psyr_4923	0.65	-0.1
5,837,137	-		Psyr_4923	0.65	-0.3
5,837,137	-		Psyr_4923	0.65	-0.1
5,837,137	-		Psyr_4923	0.65	+0.5
5,837,137	-		Psyr_4923	0.65	+0.4
5,837,137	-		Psyr_4923	0.65	+1.2
5,837,137	-		Psyr_4923	0.65	-1.2
5,837,137	-		Psyr_4923	0.65	+0.9
5,837,137	-		Psyr_4923	0.65	-1.5
5,837,137	-		Psyr_4923	0.65	-0.1
5,837,137	-		Psyr_4923	0.65	+2.1
5,837,137	-		Psyr_4923	0.65	+0.1
5,837,137	-		Psyr_4923	0.65	+1.5
5,837,137	-		Psyr_4923	0.65	+0.9
5,837,137	-		Psyr_4923	0.65	+0.6
5,837,138	+		Psyr_4923	0.65	-0.6
5,837,139	-		Psyr_4923	0.65	-0.1
5,837,139	-		Psyr_4923	0.65	+0.3
5,837,139	-		Psyr_4923	0.65	-1.7
5,837,146	+		Psyr_4923	0.66	-0.3
5,837,147	-		Psyr_4923	0.66	+0.9
5,837,171	+		Psyr_4923	0.69	+0.5
5,837,172	-		Psyr_4923	0.69	-0.4
5,837,227	+		Psyr_4923	0.75	-0.1
5,837,235	+		Psyr_4923	0.76	-2.1
5,837,235	+		Psyr_4923	0.76	+0.7
5,837,236	-		Psyr_4923	0.76	+1.9
5,837,236	-		Psyr_4923	0.76	-1.0
5,837,236	-		Psyr_4923	0.76	+0.5
5,837,236	-		Psyr_4923	0.76	-0.3
5,837,236	-		Psyr_4923	0.76	+1.1
5,837,280	+		Psyr_4923	0.81	-0.6
5,837,328	+		Psyr_4923	0.86	+1.5
5,837,328	+		Psyr_4923	0.86	-0.9
5,837,329	-		Psyr_4923	0.86	+0.5
5,837,329	-		Psyr_4923	0.86	+0.9
5,837,359	+		Psyr_4923	0.89	-0.6
5,837,359	+		Psyr_4923	0.89	-3.1
5,837,359	+		Psyr_4923	0.89	+0.7
5,837,360	-		Psyr_4923	0.90	-0.3
5,837,361	+		Psyr_4923	0.90	+0.1
5,837,361	+		Psyr_4923	0.90	-1.8
5,837,362	-		Psyr_4923	0.90	-1.4
5,837,362	-		Psyr_4923	0.90	-0.8
5,837,362	-		Psyr_4923	0.90	+0.1
5,837,362	-		Psyr_4923	0.90	-0.4
5,837,362	-		Psyr_4923	0.90	+1.0
5,837,362	-		Psyr_4923	0.90	-0.1
5,837,362	-		Psyr_4923	0.90	-2.1
5,837,362	-		Psyr_4923	0.90	-0.8
5,837,362	-		Psyr_4923	0.90	+0.7
5,837,362	-		Psyr_4923	0.90	-0.3
5,837,362	-		Psyr_4923	0.90	-0.1
5,837,362	-		Psyr_4923	0.90	-0.9
5,837,448	-				+1.0
5,837,451	+				+0.0
5,837,451	+				+0.5
5,837,452	-				+1.9
5,837,452	-				-1.8
5,837,452	-				+0.9
5,837,452	-				-0.8
5,837,452	-				+0.7
5,837,456	+				+1.8
5,837,456	+				+0.8
5,837,457	-				+0.2
5,837,457	-				+0.7
5,837,457	-				-0.4
5,837,490	-				-1.0
5,837,502	-				-0.3
5,837,532	+				-1.4
5,837,533	-				+0.1
5,837,597	+				+0.6
5,837,707	+				-0.5
5,837,708	-				-0.5
5,837,748	+				+0.6
5,837,772	-				-1.8
5,837,782	+				-0.5
5,837,782	+				-0.6
5,837,783	-				-1.8
5,837,783	-				+0.2
5,837,793	+				-1.0
5,837,794	-				+1.8
5,837,794	-				-2.1
5,837,807	+				-0.3
5,837,848	+				-1.4
5,837,848	+				+1.2
5,837,849	-				-1.3
5,837,849	-				-2.3
5,837,852	+				-1.3
5,837,852	+				-1.8
5,837,852	+				+1.6
5,837,852	+				-0.3
5,837,853	-				+2.2
5,837,853	-				+0.7
5,837,853	-				+0.5
5,837,853	-				+1.3
5,837,853	-				+0.7
5,837,853	-				+0.7
5,837,853	-				+0.9
5,837,853	-				-1.0
5,837,854	+				+1.1
5,837,854	+				+1.0
5,837,854	+				+0.5
5,837,854	+				-0.8
5,837,854	+				+1.6
5,837,854	+				+0.0
5,837,855	-				+0.5
5,837,855	-				+0.4
5,837,855	-				-1.5
5,837,855	-				-0.3
5,837,855	-				+0.8
5,837,855	-				-0.5
5,837,855	-				+1.1
5,837,856	+				-1.5
5,837,856	+				-1.0
5,837,856	+				+1.1
5,837,856	+				-0.0
5,837,857	-				+0.7
5,837,857	-				-0.3
5,837,857	-				-0.5
5,837,858	+				+0.8
5,837,858	+				-0.6
5,837,860	+				-0.1
5,837,860	+				-0.5
5,837,860	+				-1.1
5,837,861	-				+0.5
5,837,861	-				-1.9
5,837,876	+				-0.3
5,837,939	-				-0.9
5,837,939	-				+0.7
5,837,965	-				-0.3
5,837,978	+				-2.0
5,837,978	+				-1.1
5,837,978	+				-0.8
5,837,978	+				-3.1
5,837,979	-				-0.5
5,837,979	-				-1.1
5,837,979	-				-0.7
5,837,979	-				-0.1
5,837,979	-				-1.7
5,838,038	+				+2.1
5,838,063	-				-1.2
5,838,087	+				-0.1
5,838,087	+				+0.6
5,838,088	-				-0.5
5,838,089	+				+0.7
5,838,089	+				-0.2
5,838,089	+				+0.1
5,838,089	+				+0.9
5,838,090	-				-3.2
5,838,093	+				-0.5
5,838,093	+				+0.3
5,838,093	+				-1.1
5,838,093	+				-0.3
5,838,093	+				+1.6
5,838,093	+				-0.8
5,838,093	+				+1.5
5,838,094	-				+0.1
5,838,094	-				+0.3
5,838,094	-				+1.5
5,838,110	+				-0.5
5,838,111	-				-0.6
5,838,111	-				-0.4
5,838,111	-				-0.4
5,838,113	+				+1.2
5,838,175	+				-0.1
5,838,175	+				-0.2
5,838,290	+		Psyr_4924	0.10	+1.0
5,838,290	+		Psyr_4924	0.10	-0.4
5,838,303	+		Psyr_4924	0.11	-1.5
5,838,310	+		Psyr_4924	0.12	+1.0
5,838,310	+		Psyr_4924	0.12	+0.9
5,838,310	+		Psyr_4924	0.12	-0.2
5,838,311	-		Psyr_4924	0.12	+0.9
5,838,311	-		Psyr_4924	0.12	+1.5
5,838,339	+		Psyr_4924	0.15	-0.0
5,838,339	+		Psyr_4924	0.15	+0.5
5,838,340	-		Psyr_4924	0.15	-2.7
5,838,352	+		Psyr_4924	0.16	+3.1
5,838,352	+		Psyr_4924	0.16	+0.1
5,838,353	-		Psyr_4924	0.16	+1.2
5,838,353	-		Psyr_4924	0.16	+0.6
5,838,353	-		Psyr_4924	0.16	+1.3
5,838,353	-		Psyr_4924	0.16	-1.1
5,838,353	-		Psyr_4924	0.16	+1.8
5,838,353	-		Psyr_4924	0.16	+0.4
5,838,381	+		Psyr_4924	0.19	+0.1
5,838,382	-		Psyr_4924	0.19	-0.1
5,838,404	+		Psyr_4924	0.21	+0.7
5,838,404	+		Psyr_4924	0.21	-0.1
5,838,404	+		Psyr_4924	0.21	-1.8