Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4375

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
5,230,438	+				+0.9
5,230,438	+				+2.5
5,230,438	+				+0.3
5,230,438	+				+0.5
5,230,438	+				+0.3
5,230,439	-				-1.3
5,230,439	-				+0.3
5,230,439	-				-2.3
5,230,439	-				-0.2
5,230,466	+				+0.3
5,230,466	+				+1.5
5,230,467	-				-1.3
5,230,467	-				-1.0
5,230,658	+		Psyr_4374	0.20	+0.1
5,230,714	+		Psyr_4374	0.32	+1.2
5,230,714	+		Psyr_4374	0.32	-0.7
5,230,714	+		Psyr_4374	0.32	-0.9
5,230,714	+		Psyr_4374	0.32	-0.2
5,230,714	+		Psyr_4374	0.32	-1.2
5,230,715	-		Psyr_4374	0.32	-0.6
5,230,716	+		Psyr_4374	0.32	+0.2
5,230,716	+		Psyr_4374	0.32	-2.5
5,230,716	+		Psyr_4374	0.32	+0.6
5,230,716	+		Psyr_4374	0.32	-0.4
5,230,717	-		Psyr_4374	0.33	+0.8
5,230,717	-		Psyr_4374	0.33	-2.5
5,230,717	-		Psyr_4374	0.33	-1.3
5,230,717	-		Psyr_4374	0.33	-0.1
5,230,717	-		Psyr_4374	0.33	-0.3
5,230,717	-		Psyr_4374	0.33	+0.3
5,230,717	-		Psyr_4374	0.33	-0.7
5,230,717	-		Psyr_4374	0.33	+0.8
5,230,729	+		Psyr_4374	0.35	-0.7
5,230,730	-		Psyr_4374	0.36	-2.3
5,230,730	-		Psyr_4374	0.36	-0.7
5,230,817	-		Psyr_4374	0.55	+0.3
5,230,818	+		Psyr_4374	0.55	-1.0
5,230,826	-		Psyr_4374	0.57	-0.6
5,230,826	-		Psyr_4374	0.57	+0.7
5,230,826	-		Psyr_4374	0.57	-0.9
5,230,826	-		Psyr_4374	0.57	-1.7
5,230,826	-		Psyr_4374	0.57	+0.4
5,230,909	+		Psyr_4374	0.75	+0.3
5,230,909	+		Psyr_4374	0.75	-0.0
5,230,909	+		Psyr_4374	0.75	-0.4
5,230,909	+		Psyr_4374	0.75	-2.0
5,230,910	-		Psyr_4374	0.75	+0.5
5,230,910	-		Psyr_4374	0.75	-0.1
5,230,910	-		Psyr_4374	0.75	+1.1
5,230,911	+		Psyr_4374	0.75	-0.9
5,230,911	+		Psyr_4374	0.75	-1.6
5,230,911	+		Psyr_4374	0.75	+0.7
5,230,911	+		Psyr_4374	0.75	-0.3
5,230,912	-		Psyr_4374	0.75	-2.3
5,231,024	-				+0.7
5,231,045	+				-0.3
5,231,045	+				-0.5
5,231,045	+				+0.3
5,231,045	+				-1.5
5,231,045	+				+1.0
5,231,045	+				-0.1
5,231,045	+				-1.3
5,231,045	+				-1.3
5,231,045	+				-3.9
5,231,045	+				-1.1
5,231,045	+				-0.1
5,231,045	+				+1.0
5,231,046	-				+1.7
5,231,046	-				-2.4
5,231,046	-				-0.7
5,231,046	-				-0.8
5,231,046	-				-1.3
5,231,046	-				-0.8
5,231,046	-				-0.7
5,231,046	-				-1.0
5,231,046	-				+0.6
5,231,046	-				+2.6
5,231,046	-				+1.3
5,231,046	-				+0.2
5,231,046	-				+1.6
5,231,063	+				-1.3
5,231,063	+				-0.9
5,231,063	+				-2.9
5,231,063	+				+1.9
5,231,063	+				-0.0
5,231,063	+				+1.1
5,231,063	+				+0.3
5,231,063	+				+0.6
5,231,063	+				+1.0
5,231,063	+				-0.4
5,231,064	-				-2.3
5,231,064	-				+0.9
5,231,064	-				-2.0
5,231,064	-				+0.5
5,231,064	-				-3.0
5,231,064	-				-1.5
5,231,064	-				-1.0
5,231,064	-				-2.5
5,231,064	-				+0.3
5,231,064	-				-0.3
5,231,064	-				+0.1
5,231,064	-				-1.0
5,231,206	-		Psyr_4375	0.23	+1.1
5,231,206	-		Psyr_4375	0.23	+0.9
5,231,209	+		Psyr_4375	0.24	-1.3
5,231,210	-		Psyr_4375	0.24	-3.4
5,231,227	-		Psyr_4375	0.27	+0.6
5,231,374	+		Psyr_4375	0.59	-0.9
5,231,375	-		Psyr_4375	0.59	-2.2
5,231,385	+		Psyr_4375	0.61	+2.0
5,231,386	-		Psyr_4375	0.61	+0.7
5,231,424	+		Psyr_4375	0.69	+0.9
5,231,481	+		Psyr_4375	0.81	+0.3
5,231,482	+		Psyr_4375	0.82	+0.3
5,231,482	+		Psyr_4375	0.82	-2.0
5,231,482	+		Psyr_4375	0.82	-1.7
5,231,482	+		Psyr_4375	0.82	-0.1
5,231,483	-		Psyr_4375	0.82	-0.9
5,231,483	-		Psyr_4375	0.82	-1.0
5,231,484	+		Psyr_4375	0.82	-1.5
5,231,484	+		Psyr_4375	0.82	-0.2
5,231,484	+		Psyr_4375	0.82	+0.9
5,231,484	+		Psyr_4375	0.82	-1.3
5,231,484	+		Psyr_4375	0.82	-2.5
5,231,484	+		Psyr_4375	0.82	-0.1
5,231,485	-		Psyr_4375	0.82	+1.3
5,231,485	-		Psyr_4375	0.82	-0.7
5,231,485	-		Psyr_4375	0.82	-1.4
5,231,485	-		Psyr_4375	0.82	+0.4
5,231,485	-		Psyr_4375	0.82	+0.3
5,231,485	-		Psyr_4375	0.82	+0.2
5,231,505	+		Psyr_4375	0.86	+2.2
5,231,505	+		Psyr_4375	0.86	-2.0
5,231,505	+		Psyr_4375	0.86	+1.9
5,231,506	-		Psyr_4375	0.87	-2.0
5,231,506	-		Psyr_4375	0.87	-0.4
5,231,541	-				-0.2
5,231,592	+				+2.5
5,231,598	+				-0.3
5,231,598	+				+0.2
5,231,598	+				-0.1
5,231,598	+				-0.4
5,231,598	+				-0.3
5,231,599	-				+0.6
5,231,602	+				-0.7
5,231,602	+				-0.9
5,231,602	+				-1.5
5,231,602	+				-0.9
5,231,602	+				+0.4
5,231,603	-				+2.0
5,231,603	-				+1.0
5,231,603	-				-0.0
5,231,603	-				+1.4
5,231,603	-				-0.3
5,231,603	-				-0.1
5,231,606	+				-0.6
5,231,606	+				+0.2
5,231,606	+				-2.0
5,231,606	+				-1.8
5,231,607	-				-0.6
5,231,623	+				-0.8
5,231,647	+				-0.5
5,231,647	+				+1.0
5,231,647	+				-0.6
5,231,648	-				-0.2
5,231,648	-				+2.5
5,231,648	-				+0.3
5,231,648	-				-1.8
5,231,648	-				+1.3
5,231,648	-				-1.5
5,231,648	-				-1.6
5,231,648	-				+2.5
5,231,757	-				+0.0
5,231,757	-				-0.7
5,231,775	+				+1.2
5,231,776	-				-1.7
5,231,837	+		Psyr_4376	0.11	-0.5
5,231,910	+		Psyr_4376	0.20	-0.3
5,231,910	+		Psyr_4376	0.20	+0.2
5,231,910	+		Psyr_4376	0.20	+0.2
5,231,910	+		Psyr_4376	0.20	+0.9
5,232,068	+		Psyr_4376	0.40	-1.3
5,232,384	-		Psyr_4376	0.80	-0.8
5,232,423	+		Psyr_4376	0.85	+0.3
5,232,423	+		Psyr_4376	0.85	-1.7
5,232,423	+		Psyr_4376	0.85	-0.2
5,232,424	-		Psyr_4376	0.85	-2.0
5,232,424	-		Psyr_4376	0.85	+0.1
5,232,424	-		Psyr_4376	0.85	-0.1
5,232,431	+		Psyr_4376	0.86	+0.9
5,232,431	+		Psyr_4376	0.86	-0.4
5,232,431	+		Psyr_4376	0.86	-0.0
5,232,431	+		Psyr_4376	0.86	+0.6
5,232,431	+		Psyr_4376	0.86	-0.3
5,232,431	+		Psyr_4376	0.86	-0.7
5,232,432	-		Psyr_4376	0.86	-2.5
5,232,432	-		Psyr_4376	0.86	-0.1
5,232,432	-		Psyr_4376	0.86	-0.7
5,232,432	-		Psyr_4376	0.86	-1.4
5,232,432	-		Psyr_4376	0.86	+1.0
5,232,432	-		Psyr_4376	0.86	+2.9
5,232,432	-		Psyr_4376	0.86	+0.3
5,232,432	-		Psyr_4376	0.86	+0.3