Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4228 and Psyr_4229 are separated by 113 nucleotides Psyr_4229 and Psyr_4230 are separated by 89 nucleotides Psyr_4230 and Psyr_4231 overlap by 4 nucleotides
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Psyr_4230: Psyr_4230 - Helix-turn-helix, Fis-type, at 5,038,319 to 5,038,882
_4230
Psyr_4231: Psyr_4231 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,038,879 to 5,040,138
_4231
Position (kb) 5036
5037
5038
5039 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.586 kb on - strand at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.895 kb on + strand, within Psyr_4228 at 5035.896 kb on - strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.313 kb on + strand, within Psyr_4228 at 5036.420 kb on + strand at 5036.421 kb on - strand at 5036.421 kb on - strand at 5036.421 kb on - strand at 5036.432 kb on - strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.451 kb on + strand at 5036.451 kb on + strand at 5036.451 kb on + strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.485 kb on + strand at 5036.485 kb on + strand at 5036.485 kb on + strand at 5036.486 kb on - strand at 5036.486 kb on - strand at 5036.486 kb on - strand at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.821 kb on - strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5036.903 kb on - strand, within Psyr_4229 at 5037.235 kb on + strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229 at 5037.432 kb on - strand, within Psyr_4229 at 5037.628 kb on + strand, within Psyr_4229 at 5037.629 kb on - strand, within Psyr_4229 at 5037.629 kb on - strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.652 kb on + strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.824 kb on - strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.848 kb on - strand, within Psyr_4229 at 5037.928 kb on + strand, within Psyr_4229 at 5037.929 kb on - strand, within Psyr_4229 at 5037.929 kb on - strand, within Psyr_4229 at 5037.979 kb on + strand, within Psyr_4229 at 5037.979 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.194 kb on - strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.304 kb on - strand at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.432 kb on + strand, within Psyr_4230 at 5038.433 kb on - strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.521 kb on - strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.704 kb on + strand, within Psyr_4230 at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.827 kb on - strand at 5038.827 kb on - strand at 5038.949 kb on + strand at 5038.950 kb on - strand at 5039.028 kb on + strand, within Psyr_4231 at 5039.029 kb on - strand, within Psyr_4231 at 5039.031 kb on + strand, within Psyr_4231
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,035,565 + -1.0 5,035,565 + -0.3 5,035,565 + +0.5 5,035,565 + +1.7 5,035,565 + +0.6 5,035,566 - -0.5 5,035,566 - -0.2 5,035,566 - +0.3 5,035,585 + +0.3 5,035,585 + +0.1 5,035,585 + +0.3 5,035,585 + +3.0 5,035,585 + -0.1 5,035,586 - +1.9 5,035,800 + Psyr_4228 0.20 -0.1 5,035,800 + Psyr_4228 0.20 -0.2 5,035,800 + Psyr_4228 0.20 +0.3 5,035,800 + Psyr_4228 0.20 +2.3 5,035,800 + Psyr_4228 0.20 -1.2 5,035,800 + Psyr_4228 0.20 -1.6 5,035,800 + Psyr_4228 0.20 -1.3 5,035,800 + Psyr_4228 0.20 -0.5 5,035,801 - Psyr_4228 0.20 -0.7 5,035,801 - Psyr_4228 0.20 +0.1 5,035,801 - Psyr_4228 0.20 +0.3 5,035,801 - Psyr_4228 0.20 +0.6 5,035,801 - Psyr_4228 0.20 -3.3 5,035,801 - Psyr_4228 0.20 +1.3 5,035,801 - Psyr_4228 0.20 -2.5 5,035,802 + Psyr_4228 0.21 -0.9 5,035,802 + Psyr_4228 0.21 +0.6 5,035,802 + Psyr_4228 0.21 -2.0 5,035,802 + Psyr_4228 0.21 +1.9 5,035,802 + Psyr_4228 0.21 -0.6 5,035,802 + Psyr_4228 0.21 +0.3 5,035,802 + Psyr_4228 0.21 -0.1 5,035,803 - Psyr_4228 0.21 -0.9 5,035,803 - Psyr_4228 0.21 -1.5 5,035,803 - Psyr_4228 0.21 -2.0 5,035,803 - Psyr_4228 0.21 -1.3 5,035,803 - Psyr_4228 0.21 -2.0 5,035,803 - Psyr_4228 0.21 -2.9 5,035,803 - Psyr_4228 0.21 +3.5 5,035,803 - Psyr_4228 0.21 -1.0 5,035,803 - Psyr_4228 0.21 -2.5 5,035,803 - Psyr_4228 0.21 -2.7 5,035,803 - Psyr_4228 0.21 +1.1 5,035,895 + Psyr_4228 0.33 -0.1 5,035,896 - Psyr_4228 0.33 -3.5 5,036,092 + Psyr_4228 0.59 +0.1 5,036,092 + Psyr_4228 0.59 -1.0 5,036,093 - Psyr_4228 0.59 -0.7 5,036,093 - Psyr_4228 0.59 -1.3 5,036,093 - Psyr_4228 0.59 -0.1 5,036,093 - Psyr_4228 0.59 +0.1 5,036,313 + Psyr_4228 0.89 -0.5 5,036,420 + -0.4 5,036,421 - -2.7 5,036,421 - +2.7 5,036,421 - +0.3 5,036,432 - +0.4 5,036,437 + -1.0 5,036,437 + -1.7 5,036,438 - +1.4 5,036,438 - -0.3 5,036,438 - +0.3 5,036,438 - -1.4 5,036,451 + -0.1 5,036,451 + -0.0 5,036,451 + +0.4 5,036,452 - -1.2 5,036,452 - -0.2 5,036,452 - +0.7 5,036,452 - +0.4 5,036,485 + -0.7 5,036,485 + +1.7 5,036,485 + +2.6 5,036,486 - -0.3 5,036,486 - -1.6 5,036,486 - -2.4 5,036,686 + Psyr_4229 0.10 -2.5 5,036,686 + Psyr_4229 0.10 -3.3 5,036,686 + Psyr_4229 0.10 -0.8 5,036,686 + Psyr_4229 0.10 -0.9 5,036,686 + Psyr_4229 0.10 -1.4 5,036,686 + Psyr_4229 0.10 -3.0 5,036,687 - Psyr_4229 0.10 -3.4 5,036,687 - Psyr_4229 0.10 -2.6 5,036,687 - Psyr_4229 0.10 -3.5 5,036,687 - Psyr_4229 0.10 -1.3 5,036,687 - Psyr_4229 0.10 -1.5 5,036,687 - Psyr_4229 0.10 -0.9 5,036,687 - Psyr_4229 0.10 -3.4 5,036,687 - Psyr_4229 0.10 -1.7 5,036,687 - Psyr_4229 0.10 -1.4 5,036,687 - Psyr_4229 0.10 -0.7 5,036,687 - Psyr_4229 0.10 -3.2 5,036,687 - Psyr_4229 0.10 +0.3 5,036,687 - Psyr_4229 0.10 -1.9 5,036,687 - Psyr_4229 0.10 -3.0 5,036,821 - Psyr_4229 0.18 -2.0 5,036,902 + Psyr_4229 0.23 -1.7 5,036,903 - Psyr_4229 0.23 -2.0 5,037,235 + Psyr_4229 0.42 -1.3 5,037,236 - Psyr_4229 0.42 -1.9 5,037,236 - Psyr_4229 0.42 +1.3 5,037,328 + Psyr_4229 0.48 -1.7 5,037,328 + Psyr_4229 0.48 -2.0 5,037,329 - Psyr_4229 0.48 -1.3 5,037,432 - Psyr_4229 0.54 -1.7 5,037,628 + Psyr_4229 0.65 -1.9 5,037,629 - Psyr_4229 0.65 -2.3 5,037,629 - Psyr_4229 0.65 -4.0 5,037,650 + Psyr_4229 0.66 -3.4 5,037,650 + Psyr_4229 0.66 -1.0 5,037,650 + Psyr_4229 0.66 -2.5 5,037,650 + Psyr_4229 0.66 -2.2 5,037,650 + Psyr_4229 0.66 -2.9 5,037,650 + Psyr_4229 0.66 -0.6 5,037,650 + Psyr_4229 0.66 -0.0 5,037,650 + Psyr_4229 0.66 -2.0 5,037,650 + Psyr_4229 0.66 -0.4 5,037,650 + Psyr_4229 0.66 -0.0 5,037,650 + Psyr_4229 0.66 -0.7 5,037,650 + Psyr_4229 0.66 -0.3 5,037,650 + Psyr_4229 0.66 -0.7 5,037,650 + Psyr_4229 0.66 -1.7 5,037,651 - Psyr_4229 0.66 -2.0 5,037,651 - Psyr_4229 0.66 -1.6 5,037,651 - Psyr_4229 0.66 -1.3 5,037,651 - Psyr_4229 0.66 -1.9 5,037,651 - Psyr_4229 0.66 -1.9 5,037,651 - Psyr_4229 0.66 -2.9 5,037,651 - Psyr_4229 0.66 -1.5 5,037,651 - Psyr_4229 0.66 -0.7 5,037,651 - Psyr_4229 0.66 -1.3 5,037,651 - Psyr_4229 0.66 -1.1 5,037,651 - Psyr_4229 0.66 -2.7 5,037,652 + Psyr_4229 0.66 -2.9 5,037,653 - Psyr_4229 0.66 -3.0 5,037,653 - Psyr_4229 0.66 -3.5 5,037,653 - Psyr_4229 0.66 -2.2 5,037,653 - Psyr_4229 0.66 -2.3 5,037,653 - Psyr_4229 0.66 -0.7 5,037,653 - Psyr_4229 0.66 -3.0 5,037,824 - Psyr_4229 0.76 -0.9 5,037,847 + Psyr_4229 0.78 -1.0 5,037,847 + Psyr_4229 0.78 -1.3 5,037,848 - Psyr_4229 0.78 -2.0 5,037,928 + Psyr_4229 0.82 -1.0 5,037,929 - Psyr_4229 0.82 -1.3 5,037,929 - Psyr_4229 0.82 +0.3 5,037,979 + Psyr_4229 0.85 -3.3 5,037,979 + Psyr_4229 0.85 -2.3 5,038,030 + Psyr_4229 0.88 -2.5 5,038,030 + Psyr_4229 0.88 -3.4 5,038,030 + Psyr_4229 0.88 -0.5 5,038,031 - Psyr_4229 0.88 -1.3 5,038,031 - Psyr_4229 0.88 -2.3 5,038,031 - Psyr_4229 0.88 -1.4 5,038,194 - -1.7 5,038,257 + +0.2 5,038,257 + -2.3 5,038,257 + +0.9 5,038,257 + -1.9 5,038,257 + -0.7 5,038,257 + -1.4 5,038,258 - +0.5 5,038,258 - +1.3 5,038,258 - -1.8 5,038,304 - -1.4 5,038,399 + Psyr_4230 0.14 -1.2 5,038,399 + Psyr_4230 0.14 +0.3 5,038,399 + Psyr_4230 0.14 +0.0 5,038,399 + Psyr_4230 0.14 +0.3 5,038,400 - Psyr_4230 0.14 +1.6 5,038,400 - Psyr_4230 0.14 +1.7 5,038,400 - Psyr_4230 0.14 -2.3 5,038,432 + Psyr_4230 0.20 -0.6 5,038,433 - Psyr_4230 0.20 +1.3 5,038,520 + Psyr_4230 0.36 -3.7 5,038,520 + Psyr_4230 0.36 -0.7 5,038,520 + Psyr_4230 0.36 +1.1 5,038,520 + Psyr_4230 0.36 -1.0 5,038,520 + Psyr_4230 0.36 +0.5 5,038,521 - Psyr_4230 0.36 -0.9 5,038,551 + Psyr_4230 0.41 +0.6 5,038,551 + Psyr_4230 0.41 -1.6 5,038,551 + Psyr_4230 0.41 -1.7 5,038,551 + Psyr_4230 0.41 +0.3 5,038,551 + Psyr_4230 0.41 +0.3 5,038,552 - Psyr_4230 0.41 +0.3 5,038,552 - Psyr_4230 0.41 -0.7 5,038,552 - Psyr_4230 0.41 -1.0 5,038,552 - Psyr_4230 0.41 -0.2 5,038,552 - Psyr_4230 0.41 +1.0 5,038,552 - Psyr_4230 0.41 +0.7 5,038,704 + Psyr_4230 0.68 +0.7 5,038,826 + -0.9 5,038,826 + -2.0 5,038,826 + -0.0 5,038,827 - +0.8 5,038,827 - -0.7 5,038,949 + +0.7 5,038,950 - -0.5 5,039,028 + Psyr_4231 0.12 +0.7 5,039,029 - Psyr_4231 0.12 -0.2 5,039,031 + Psyr_4231 0.12 -1.4
Or see this region's nucleotide sequence