Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4215

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
5,019,519	-				-0.7
5,019,702	+		Psyr_4214	0.21	-0.7
5,019,702	+		Psyr_4214	0.21	+2.3
5,019,702	+		Psyr_4214	0.21	-0.9
5,019,703	-		Psyr_4214	0.21	-1.4
5,019,803	-		Psyr_4214	0.33	-0.7
5,019,891	+		Psyr_4214	0.43	+0.9
5,019,892	-		Psyr_4214	0.43	-2.5
5,019,892	-		Psyr_4214	0.43	+0.8
5,019,892	-		Psyr_4214	0.43	-2.1
5,019,892	-		Psyr_4214	0.43	-0.6
5,019,924	+		Psyr_4214	0.47	-0.9
5,019,925	-		Psyr_4214	0.47	+0.3
5,019,925	-		Psyr_4214	0.47	-1.5
5,019,925	-		Psyr_4214	0.47	-1.3
5,019,925	-		Psyr_4214	0.47	-3.2
5,019,925	-		Psyr_4214	0.47	-0.1
5,020,044	+		Psyr_4214	0.61	+1.1
5,020,224	+		Psyr_4214	0.81	+0.0
5,020,224	+		Psyr_4214	0.81	+1.1
5,020,225	-		Psyr_4214	0.81	-1.3
5,020,236	+		Psyr_4214	0.83	-0.7
5,020,236	+		Psyr_4214	0.83	-1.3
5,020,236	+		Psyr_4214	0.83	-0.4
5,020,237	-		Psyr_4214	0.83	-1.7
5,020,268	+		Psyr_4214	0.86	-1.9
5,020,268	+		Psyr_4214	0.86	-1.1
5,020,287	-		Psyr_4214	0.89	-1.6
5,020,390	-				+0.7
5,020,490	+		Psyr_4215	0.11	+0.9
5,020,490	+		Psyr_4215	0.11	-0.7
5,020,490	+		Psyr_4215	0.11	+1.6
5,020,490	+		Psyr_4215	0.11	+0.8
5,020,490	+		Psyr_4215	0.11	+0.6
5,020,490	+		Psyr_4215	0.11	-2.9
5,020,491	-		Psyr_4215	0.12	-1.0
5,020,491	-		Psyr_4215	0.12	-0.6
5,020,491	-		Psyr_4215	0.12	-0.1
5,020,491	-		Psyr_4215	0.12	-1.6
5,021,020	+		Psyr_4215	0.67	+0.4
5,021,020	+		Psyr_4215	0.67	+0.2
5,021,020	+		Psyr_4215	0.67	-0.3
5,021,021	-		Psyr_4215	0.68	-2.5
5,021,021	-		Psyr_4215	0.68	+0.9
5,021,021	-		Psyr_4215	0.68	-0.1
5,021,056	+		Psyr_4215	0.71	-2.1
5,021,056	+		Psyr_4215	0.71	-2.3
5,021,056	+		Psyr_4215	0.71	-1.7
5,021,056	+		Psyr_4215	0.71	+2.6
5,021,057	-		Psyr_4215	0.71	-0.1
5,021,057	-		Psyr_4215	0.71	+0.0
5,021,057	-		Psyr_4215	0.71	-0.1
5,021,057	-		Psyr_4215	0.71	+1.5
5,021,057	-		Psyr_4215	0.71	-0.7
5,021,057	-		Psyr_4215	0.71	-0.4
5,021,057	-		Psyr_4215	0.71	-1.5
5,021,057	-		Psyr_4215	0.71	+1.1
5,021,057	-		Psyr_4215	0.71	-1.7
5,021,062	+		Psyr_4215	0.72	-0.1
5,021,062	+		Psyr_4215	0.72	+1.3
5,021,063	-		Psyr_4215	0.72	-2.5
5,021,063	-		Psyr_4215	0.72	-2.0
5,021,063	-		Psyr_4215	0.72	+1.7
5,021,069	+		Psyr_4215	0.73	+1.3
5,021,069	+		Psyr_4215	0.73	+0.7
5,021,069	+		Psyr_4215	0.73	-0.3
5,021,069	+		Psyr_4215	0.73	-2.0
5,021,070	-		Psyr_4215	0.73	-0.3
5,021,070	-		Psyr_4215	0.73	-2.7
5,021,117	+		Psyr_4215	0.78	+0.1
5,021,118	-		Psyr_4215	0.78	+1.1
5,021,118	-		Psyr_4215	0.78	-0.7
5,021,118	-		Psyr_4215	0.78	-0.7
5,021,118	-		Psyr_4215	0.78	-0.7
5,021,123	+		Psyr_4215	0.78	+2.6
5,021,123	+		Psyr_4215	0.78	+0.1
5,021,123	+		Psyr_4215	0.78	+0.3
5,021,123	+		Psyr_4215	0.78	-1.1
5,021,123	+		Psyr_4215	0.78	-2.3
5,021,123	+		Psyr_4215	0.78	-1.5
5,021,123	+		Psyr_4215	0.78	-0.6
5,021,123	+		Psyr_4215	0.78	-0.3
5,021,123	+		Psyr_4215	0.78	-1.3
5,021,123	+		Psyr_4215	0.78	+1.1
5,021,123	+		Psyr_4215	0.78	-1.1
5,021,123	+		Psyr_4215	0.78	+0.9
5,021,123	+		Psyr_4215	0.78	-1.7
5,021,123	+		Psyr_4215	0.78	-1.0
5,021,123	+		Psyr_4215	0.78	-2.3
5,021,124	-		Psyr_4215	0.78	+0.3
5,021,124	-		Psyr_4215	0.78	+0.6
5,021,124	-		Psyr_4215	0.78	+0.5
5,021,124	-		Psyr_4215	0.78	-1.5
5,021,124	-		Psyr_4215	0.78	-0.1
5,021,124	-		Psyr_4215	0.78	-1.7
5,021,124	-		Psyr_4215	0.78	-1.1
5,021,124	-		Psyr_4215	0.78	-1.0
5,021,124	-		Psyr_4215	0.78	-3.4
5,021,153	+		Psyr_4215	0.81	+0.6
5,021,153	+		Psyr_4215	0.81	-0.7
5,021,374	+				-2.9
5,021,392	-				-1.6
5,021,395	+				-0.0
5,021,395	+				-0.4
5,021,395	+				+0.6
5,021,395	+				-0.4
5,021,395	+				-0.7
5,021,395	+				-0.0
5,021,396	-				-0.3
5,021,396	-				-0.1
5,021,416	+				+0.3
5,021,416	+				+0.8
5,021,417	-				-1.9
5,021,477	-				+1.9
5,021,550	+				+0.5
5,021,550	+				+0.1
5,021,560	+				+0.7
5,021,561	-				-1.5
5,021,562	+				-0.6
5,021,563	-				-0.9
5,021,616	-				+1.1
5,021,622	+				+0.9
5,021,622	+				-0.9
5,021,622	+				-0.7
5,021,622	+				+0.7
5,021,622	+				+3.3
5,021,622	+				+0.5
5,021,622	+				+1.1
5,021,622	+				-0.1
5,021,622	+				+2.1
5,021,622	+				-0.3
5,021,623	-				+0.6
5,021,623	-				-2.3
5,021,623	-				-2.5
5,021,623	-				+0.3
5,021,623	-				+1.1
5,021,623	-				-1.6
5,021,624	+				-0.3
5,021,624	+				-0.9
5,021,624	+				+0.3
5,021,624	+				+0.3
5,021,625	-				+0.6
5,021,625	-				-0.2
5,021,625	-				-0.0
5,021,625	-				-1.1
5,021,625	-				-1.0
5,021,625	-				-2.0
5,021,627	+				+1.5
5,021,635	+				+1.5
5,021,635	+				+0.0
5,021,635	+				-0.4
5,021,636	-				-2.0
5,021,636	-				+1.7
5,021,636	-				-0.3
5,021,673	-				-2.3
5,021,673	-				+0.7
5,021,673	-				+0.0
5,021,673	-				-2.3
5,021,714	+				+0.6
5,021,714	+				-0.8
5,021,714	+				-0.5
5,021,715	-				-0.5
5,021,715	-				-1.2
5,021,781	+		Psyr_4216	0.15	+0.6
5,021,781	+		Psyr_4216	0.15	+1.1
5,021,781	+		Psyr_4216	0.15	+1.1
5,021,781	+		Psyr_4216	0.15	+0.5
5,021,782	-		Psyr_4216	0.15	-0.2
5,021,787	+		Psyr_4216	0.16	+1.5
5,021,788	-		Psyr_4216	0.16	-0.9
5,021,852	+		Psyr_4216	0.24	+1.9
5,021,852	+		Psyr_4216	0.24	+1.9
5,021,852	+		Psyr_4216	0.24	-0.7
5,021,852	+		Psyr_4216	0.24	-0.7
5,021,852	+		Psyr_4216	0.24	-0.5
5,021,852	+		Psyr_4216	0.24	+0.3
5,021,853	-		Psyr_4216	0.24	+0.3
5,021,853	-		Psyr_4216	0.24	-1.4
5,021,892	+		Psyr_4216	0.29	-0.5
5,021,893	-		Psyr_4216	0.30	+0.5
5,021,895	+		Psyr_4216	0.30	-1.3
5,021,895	+		Psyr_4216	0.30	+0.4
5,021,895	+		Psyr_4216	0.30	+2.2
5,021,895	+		Psyr_4216	0.30	-0.4
5,021,896	-		Psyr_4216	0.30	-2.1
5,021,947	+		Psyr_4216	0.37	-1.6
5,021,955	+		Psyr_4216	0.38	-0.2
5,021,955	+		Psyr_4216	0.38	-1.7
5,021,956	-		Psyr_4216	0.38	-1.7
5,021,956	-		Psyr_4216	0.38	-0.1
5,021,956	-		Psyr_4216	0.38	+0.8
5,022,217	+		Psyr_4216	0.72	-3.3