Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4192

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4191 and Psyr_4192 are separated by 136 nucleotidesPsyr_4192 and Psyr_4193 are separated by 216 nucleotides Psyr_4191: Psyr_4191 - carbamoyl-phosphate synthase large subunit, at 4,983,696 to 4,986,917 _4191 Psyr_4192: Psyr_4192 - carbamoyl-phosphate synthase small subunit, at 4,987,054 to 4,988,190 _4192 Psyr_4193: Psyr_4193 - dihydrodipicolinate reductase, at 4,988,407 to 4,989,210 _4193 Position (kb) 4987 4988 4989Strain fitness (log2 ratio) -2 -1 0 1 2at 4987.032 kb on - strandat 4987.032 kb on - strandat 4987.032 kb on - strandat 4987.032 kb on - strandat 4987.035 kb on - strandat 4987.035 kb on - strandat 4987.035 kb on - strandat 4987.035 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.276 kb on - strandat 4988.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,987,032 - -0.9
4,987,032 - +0.9
4,987,032 - +2.2
4,987,032 - -1.2
4,987,035 - -1.3
4,987,035 - +1.3
4,987,035 - -1.5
4,987,035 - +0.9
4,988,254 - -1.3
4,988,254 - +0.3
4,988,254 - -2.3
4,988,254 - +0.3
4,988,254 - -0.0
4,988,258 - +0.0
4,988,258 - -1.8
4,988,258 - -1.7
4,988,258 - +1.1
4,988,258 - +0.1
4,988,258 - +0.7
4,988,258 - +1.0
4,988,258 - +0.9
4,988,258 - +0.4
4,988,258 - +0.9
4,988,276 - -1.3
4,988,401 - -0.3

Or see this region's nucleotide sequence