Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3536

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
4,213,570	-				+0.2
4,213,570	-				-0.3
4,213,589	+				-1.0
4,213,590	-				+0.4
4,213,729	+				+0.8
4,213,729	+				+2.0
4,213,730	-				+0.5
4,213,730	-				+0.0
4,213,730	-				-0.8
4,213,730	-				+1.2
4,213,730	-				+1.2
4,213,730	-				+1.9
4,213,730	-				-0.5
4,213,730	-				-0.4
4,213,733	+				-0.1
4,213,768	+				-1.0
4,213,774	+				+1.3
4,213,872	+				+1.9
4,213,872	+				+0.4
4,213,873	-				+1.0
4,213,877	+				-0.2
4,213,877	+				-0.2
4,213,878	-		Psyr_3535	0.10	-1.6
4,213,878	-		Psyr_3535	0.10	+1.6
4,213,878	-		Psyr_3535	0.10	-2.3
4,213,878	-		Psyr_3535	0.10	+0.4
4,213,878	-		Psyr_3535	0.10	-0.9
4,213,878	-		Psyr_3535	0.10	-1.1
4,213,878	-		Psyr_3535	0.10	-2.0
4,213,878	-		Psyr_3535	0.10	+2.0
4,213,906	+		Psyr_3535	0.14	+1.6
4,213,906	+		Psyr_3535	0.14	-0.2
4,213,907	-		Psyr_3535	0.14	-0.6
4,213,907	-		Psyr_3535	0.14	-1.0
4,213,933	+		Psyr_3535	0.17	+1.2
4,213,933	+		Psyr_3535	0.17	-1.0
4,213,933	+		Psyr_3535	0.17	-1.3
4,213,933	+		Psyr_3535	0.17	-0.3
4,213,933	+		Psyr_3535	0.17	-0.8
4,213,933	+		Psyr_3535	0.17	+1.3
4,213,933	+		Psyr_3535	0.17	-1.6
4,213,933	+		Psyr_3535	0.17	+1.0
4,213,934	-		Psyr_3535	0.17	+0.3
4,213,934	-		Psyr_3535	0.17	-0.7
4,213,934	-		Psyr_3535	0.17	+1.2
4,213,934	-		Psyr_3535	0.17	-0.6
4,213,934	-		Psyr_3535	0.17	+0.0
4,213,934	-		Psyr_3535	0.17	-1.1
4,213,934	-		Psyr_3535	0.17	+0.0
4,213,934	-		Psyr_3535	0.17	+0.3
4,213,934	-		Psyr_3535	0.17	+1.2
4,213,987	+		Psyr_3535	0.24	-0.5
4,213,987	+		Psyr_3535	0.24	-0.7
4,213,987	+		Psyr_3535	0.24	-0.5
4,214,077	+		Psyr_3535	0.35	+0.7
4,214,077	+		Psyr_3535	0.35	-0.8
4,214,230	+		Psyr_3535	0.54	+0.3
4,214,230	+		Psyr_3535	0.54	-1.7
4,214,230	+		Psyr_3535	0.54	-1.6
4,214,231	-		Psyr_3535	0.54	+1.2
4,214,231	-		Psyr_3535	0.54	+0.2
4,214,231	-		Psyr_3535	0.54	+0.0
4,214,476	+		Psyr_3535	0.85	+1.6
4,214,477	-		Psyr_3535	0.85	-0.4
4,214,477	-		Psyr_3535	0.85	+0.0
4,214,525	+				+0.0
4,214,525	+				-0.7
4,214,525	+				+0.7
4,214,525	+				+1.3
4,214,563	+				+0.0
4,214,564	-				-0.6
4,214,574	+				-1.6
4,214,575	-				+1.1
4,214,575	-				+0.0
4,214,575	-				+0.5
4,214,575	-				+0.8
4,214,575	-				+2.5
4,214,646	+		Psyr_3536	0.20	-1.4
4,214,674	+		Psyr_3536	0.27	+0.5
4,214,674	+		Psyr_3536	0.27	-0.2
4,214,674	+		Psyr_3536	0.27	+0.9
4,214,674	+		Psyr_3536	0.27	+2.2
4,214,675	-		Psyr_3536	0.27	-1.6
4,214,710	-		Psyr_3536	0.35	-2.0
4,214,755	+		Psyr_3536	0.46	-1.3
4,214,756	-		Psyr_3536	0.46	+0.0
4,214,756	-		Psyr_3536	0.46	+1.0
4,214,756	-		Psyr_3536	0.46	-1.9
4,214,834	+		Psyr_3536	0.65	+0.9
4,214,835	-		Psyr_3536	0.65	-1.2
4,214,871	+		Psyr_3536	0.74	+2.4
4,214,872	-		Psyr_3536	0.74	-1.3
4,214,872	-		Psyr_3536	0.74	+0.7
4,214,972	+				-0.1
4,215,126	+				+0.3
4,215,127	-				-1.1
4,215,127	-				-0.5
4,215,149	+				+2.3
4,215,159	-				+0.0
4,215,239	-				+0.6
4,215,285	+				+1.5
4,215,311	-		Psyr_3537	0.13	-1.0
4,215,417	-		Psyr_3537	0.25	+0.7
4,215,472	+		Psyr_3537	0.32	+0.2
4,215,472	+		Psyr_3537	0.32	-0.4
4,215,472	+		Psyr_3537	0.32	+0.6
4,215,473	-		Psyr_3537	0.32	-0.5
4,215,511	+		Psyr_3537	0.36	+0.6
4,215,511	+		Psyr_3537	0.36	+0.3
4,215,511	+		Psyr_3537	0.36	-2.2
4,215,511	+		Psyr_3537	0.36	+0.6
4,215,511	+		Psyr_3537	0.36	-1.6
4,215,512	-		Psyr_3537	0.36	-1.0
4,215,522	+		Psyr_3537	0.37	+0.0
4,215,523	-		Psyr_3537	0.38	+1.1
4,215,523	-		Psyr_3537	0.38	-1.6
4,215,523	-		Psyr_3537	0.38	+0.8
4,215,523	-		Psyr_3537	0.38	-1.6
4,215,681	+		Psyr_3537	0.56	-0.4
4,215,681	+		Psyr_3537	0.56	+1.2
4,215,681	+		Psyr_3537	0.56	+0.6
4,215,681	+		Psyr_3537	0.56	-2.6
4,215,682	-		Psyr_3537	0.56	+1.4
4,215,682	-		Psyr_3537	0.56	+1.3
4,215,682	-		Psyr_3537	0.56	-2.3
4,215,682	-		Psyr_3537	0.56	+0.9
4,215,788	+		Psyr_3537	0.68	+0.0
4,215,818	+		Psyr_3537	0.72	+1.0
4,215,818	+		Psyr_3537	0.72	-0.5
4,215,818	+		Psyr_3537	0.72	+0.6
4,215,818	+		Psyr_3537	0.72	+0.7
4,215,819	-		Psyr_3537	0.72	-0.4
4,215,819	-		Psyr_3537	0.72	-1.0
4,215,819	-		Psyr_3537	0.72	+0.8
4,215,848	+		Psyr_3537	0.75	-1.0
4,215,848	+		Psyr_3537	0.75	+0.2
4,215,848	+		Psyr_3537	0.75	-1.7
4,215,848	+		Psyr_3537	0.75	+1.0
4,215,848	+		Psyr_3537	0.75	+1.6
4,215,848	+		Psyr_3537	0.75	+0.4
4,215,848	+		Psyr_3537	0.75	+0.3
4,215,848	+		Psyr_3537	0.75	+0.4
4,215,848	+		Psyr_3537	0.75	-1.1
4,215,848	+		Psyr_3537	0.75	+2.0
4,215,848	+		Psyr_3537	0.75	+0.0
4,215,848	+		Psyr_3537	0.75	+1.8
4,215,848	+		Psyr_3537	0.75	+0.3
4,215,848	+		Psyr_3537	0.75	-0.4
4,215,848	+		Psyr_3537	0.75	+2.6
4,215,848	+		Psyr_3537	0.75	+0.8
4,215,849	-		Psyr_3537	0.75	+0.0
4,215,849	-		Psyr_3537	0.75	-1.0
4,215,849	-		Psyr_3537	0.75	+0.7
4,215,849	-		Psyr_3537	0.75	-0.4
4,215,849	-		Psyr_3537	0.75	+0.2
4,215,849	-		Psyr_3537	0.75	+0.0
4,215,849	-		Psyr_3537	0.75	-1.8
4,215,849	-		Psyr_3537	0.75	+1.5
4,215,849	-		Psyr_3537	0.75	+0.1
4,215,849	-		Psyr_3537	0.75	+1.0
4,215,849	-		Psyr_3537	0.75	+0.7
4,215,849	-		Psyr_3537	0.75	+0.7
4,215,971	+		Psyr_3537	0.89	+1.6