Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3126 and Psyr_3127 are separated by 86 nucleotides Psyr_3127 and Psyr_3128 overlap by 23 nucleotides Psyr_3128 and Psyr_3129 are separated by 498 nucleotides
Psyr_3126: Psyr_3126 - transporter, putative, at 3,748,593 to 3,749,528
_3126
Psyr_3127: Psyr_3127 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 3,749,615 to 3,750,298
_3127
Psyr_3128: Psyr_3128 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 3,750,276 to 3,751,673
_3128
Psyr_3129: Psyr_3129 - 3-hydroxyacyl-CoA-acyl carrier protein transferase, at 3,752,172 to 3,753,035
_3129
Position (kb)
3750
3751
3752 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3749.278 kb on + strand, within Psyr_3126 at 3749.278 kb on + strand, within Psyr_3126 at 3749.278 kb on + strand, within Psyr_3126 at 3749.278 kb on + strand, within Psyr_3126 at 3749.278 kb on + strand, within Psyr_3126 at 3749.279 kb on - strand, within Psyr_3126 at 3749.279 kb on - strand, within Psyr_3126 at 3749.279 kb on - strand, within Psyr_3126 at 3749.283 kb on + strand, within Psyr_3126 at 3749.283 kb on + strand, within Psyr_3126 at 3749.283 kb on + strand, within Psyr_3126 at 3749.283 kb on + strand, within Psyr_3126 at 3749.284 kb on - strand, within Psyr_3126 at 3749.284 kb on - strand, within Psyr_3126 at 3749.284 kb on - strand, within Psyr_3126 at 3749.290 kb on + strand, within Psyr_3126 at 3749.291 kb on - strand, within Psyr_3126 at 3749.291 kb on - strand, within Psyr_3126 at 3749.524 kb on + strand at 3749.524 kb on + strand at 3749.524 kb on + strand at 3749.525 kb on - strand at 3749.525 kb on - strand at 3749.525 kb on - strand at 3749.525 kb on - strand at 3749.525 kb on - strand at 3749.525 kb on - strand at 3749.571 kb on - strand at 3749.571 kb on - strand at 3749.599 kb on + strand at 3749.600 kb on - strand at 3749.750 kb on + strand, within Psyr_3127 at 3749.751 kb on - strand, within Psyr_3127 at 3749.758 kb on + strand, within Psyr_3127 at 3749.759 kb on - strand, within Psyr_3127 at 3749.759 kb on - strand, within Psyr_3127 at 3749.759 kb on - strand, within Psyr_3127 at 3749.759 kb on - strand, within Psyr_3127 at 3749.759 kb on - strand, within Psyr_3127 at 3749.910 kb on - strand, within Psyr_3127 at 3750.276 kb on - strand at 3750.325 kb on + strand at 3750.336 kb on + strand at 3750.336 kb on + strand at 3750.337 kb on - strand at 3750.337 kb on - strand at 3750.402 kb on + strand at 3750.403 kb on - strand at 3750.528 kb on + strand, within Psyr_3128 at 3750.528 kb on + strand, within Psyr_3128 at 3750.529 kb on - strand, within Psyr_3128 at 3750.529 kb on - strand, within Psyr_3128 at 3750.569 kb on + strand, within Psyr_3128 at 3750.616 kb on + strand, within Psyr_3128 at 3750.616 kb on + strand, within Psyr_3128 at 3750.616 kb on + strand, within Psyr_3128 at 3750.616 kb on + strand, within Psyr_3128 at 3750.817 kb on + strand, within Psyr_3128 at 3750.817 kb on + strand, within Psyr_3128 at 3750.818 kb on - strand, within Psyr_3128 at 3751.011 kb on - strand, within Psyr_3128 at 3751.240 kb on + strand, within Psyr_3128 at 3751.240 kb on + strand, within Psyr_3128 at 3751.241 kb on - strand, within Psyr_3128 at 3751.241 kb on - strand, within Psyr_3128 at 3751.241 kb on - strand, within Psyr_3128 at 3751.241 kb on - strand, within Psyr_3128 at 3751.288 kb on + strand, within Psyr_3128 at 3751.512 kb on + strand, within Psyr_3128 at 3751.565 kb on - strand at 3751.596 kb on - strand at 3751.606 kb on + strand at 3751.607 kb on - strand at 3751.863 kb on + strand at 3751.863 kb on + strand at 3751.864 kb on - strand at 3751.914 kb on + strand at 3751.914 kb on + strand at 3751.914 kb on + strand at 3751.915 kb on - strand at 3751.915 kb on - strand at 3751.915 kb on - strand at 3751.973 kb on - strand at 3751.973 kb on - strand at 3752.014 kb on + strand at 3752.014 kb on + strand at 3752.014 kb on + strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.015 kb on - strand at 3752.066 kb on - strand at 3752.068 kb on + strand at 3752.068 kb on + strand at 3752.068 kb on + strand at 3752.069 kb on - strand at 3752.069 kb on - strand at 3752.090 kb on + strand at 3752.091 kb on - strand at 3752.138 kb on - strand at 3752.138 kb on - strand at 3752.194 kb on + strand at 3752.195 kb on - strand at 3752.208 kb on + strand at 3752.208 kb on + strand at 3752.209 kb on - strand at 3752.229 kb on + strand at 3752.230 kb on - strand at 3752.314 kb on - strand, within Psyr_3129 at 3752.314 kb on - strand, within Psyr_3129 at 3752.314 kb on - strand, within Psyr_3129 at 3752.329 kb on - strand, within Psyr_3129 at 3752.329 kb on - strand, within Psyr_3129 at 3752.416 kb on + strand, within Psyr_3129 at 3752.446 kb on - strand, within Psyr_3129 at 3752.486 kb on - strand, within Psyr_3129 at 3752.580 kb on + strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.581 kb on - strand, within Psyr_3129 at 3752.582 kb on + strand, within Psyr_3129 at 3752.662 kb on - strand, within Psyr_3129
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,749,278 + Psyr_3126 0.73 +1.6 3,749,278 + Psyr_3126 0.73 +0.1 3,749,278 + Psyr_3126 0.73 +1.1 3,749,278 + Psyr_3126 0.73 +1.6 3,749,278 + Psyr_3126 0.73 +1.3 3,749,279 - Psyr_3126 0.73 -2.9 3,749,279 - Psyr_3126 0.73 -1.1 3,749,279 - Psyr_3126 0.73 -0.5 3,749,283 + Psyr_3126 0.74 -0.4 3,749,283 + Psyr_3126 0.74 +0.8 3,749,283 + Psyr_3126 0.74 +0.4 3,749,283 + Psyr_3126 0.74 +0.6 3,749,284 - Psyr_3126 0.74 -2.1 3,749,284 - Psyr_3126 0.74 -0.8 3,749,284 - Psyr_3126 0.74 -1.7 3,749,290 + Psyr_3126 0.74 +0.3 3,749,291 - Psyr_3126 0.75 -0.9 3,749,291 - Psyr_3126 0.75 -1.1 3,749,524 + +0.3 3,749,524 + +2.5 3,749,524 + +0.2 3,749,525 - -2.4 3,749,525 - -1.9 3,749,525 - -1.7 3,749,525 - -1.4 3,749,525 - -2.2 3,749,525 - -1.7 3,749,571 - -2.7 3,749,571 - -1.1 3,749,599 + -0.1 3,749,600 - -0.5 3,749,750 + Psyr_3127 0.20 -2.4 3,749,751 - Psyr_3127 0.20 -2.4 3,749,758 + Psyr_3127 0.21 -0.1 3,749,759 - Psyr_3127 0.21 -2.7 3,749,759 - Psyr_3127 0.21 -0.7 3,749,759 - Psyr_3127 0.21 -1.8 3,749,759 - Psyr_3127 0.21 -1.7 3,749,759 - Psyr_3127 0.21 -1.7 3,749,910 - Psyr_3127 0.43 -1.1 3,750,276 - -3.7 3,750,325 + -3.9 3,750,336 + -2.1 3,750,336 + -0.1 3,750,337 - -1.1 3,750,337 - -2.7 3,750,402 + -1.3 3,750,403 - -2.4 3,750,528 + Psyr_3128 0.18 -1.7 3,750,528 + Psyr_3128 0.18 -1.7 3,750,529 - Psyr_3128 0.18 -1.1 3,750,529 - Psyr_3128 0.18 -2.7 3,750,569 + Psyr_3128 0.21 -3.9 3,750,616 + Psyr_3128 0.24 -1.1 3,750,616 + Psyr_3128 0.24 -0.3 3,750,616 + Psyr_3128 0.24 -0.1 3,750,616 + Psyr_3128 0.24 -2.3 3,750,817 + Psyr_3128 0.39 +0.9 3,750,817 + Psyr_3128 0.39 -0.1 3,750,818 - Psyr_3128 0.39 -2.4 3,751,011 - Psyr_3128 0.53 -2.1 3,751,240 + Psyr_3128 0.69 -0.3 3,751,240 + Psyr_3128 0.69 -3.1 3,751,241 - Psyr_3128 0.69 -3.5 3,751,241 - Psyr_3128 0.69 -3.1 3,751,241 - Psyr_3128 0.69 -2.1 3,751,241 - Psyr_3128 0.69 -2.1 3,751,288 + Psyr_3128 0.72 -3.4 3,751,512 + Psyr_3128 0.88 -2.7 3,751,565 - -3.1 3,751,596 - -1.1 3,751,606 + -0.8 3,751,607 - -1.8 3,751,863 + +0.9 3,751,863 + +0.3 3,751,864 - -2.1 3,751,914 + +0.4 3,751,914 + +1.5 3,751,914 + -2.1 3,751,915 - +0.3 3,751,915 - -2.1 3,751,915 - +1.7 3,751,973 - -1.1 3,751,973 - -2.1 3,752,014 + -0.2 3,752,014 + +0.5 3,752,014 + -2.2 3,752,015 - -0.3 3,752,015 - -2.0 3,752,015 - -0.6 3,752,015 - -0.1 3,752,015 - -3.4 3,752,015 - +1.5 3,752,015 - +0.4 3,752,015 - -2.1 3,752,015 - -1.9 3,752,015 - -2.9 3,752,066 - -1.9 3,752,068 + -2.4 3,752,068 + -0.7 3,752,068 + +0.3 3,752,069 - +1.6 3,752,069 - +0.1 3,752,090 + -2.7 3,752,091 - +1.2 3,752,138 - +0.4 3,752,138 - -0.4 3,752,194 + -0.5 3,752,195 - +0.2 3,752,208 + -0.6 3,752,208 + -2.4 3,752,209 - +0.3 3,752,229 + +0.1 3,752,230 - -0.1 3,752,314 - Psyr_3129 0.16 -1.7 3,752,314 - Psyr_3129 0.16 -0.1 3,752,314 - Psyr_3129 0.16 +0.3 3,752,329 - Psyr_3129 0.18 -0.9 3,752,329 - Psyr_3129 0.18 +1.9 3,752,416 + Psyr_3129 0.28 -0.1 3,752,446 - Psyr_3129 0.32 +0.9 3,752,486 - Psyr_3129 0.36 -1.9 3,752,580 + Psyr_3129 0.47 +0.0 3,752,581 - Psyr_3129 0.47 +1.0 3,752,581 - Psyr_3129 0.47 +0.3 3,752,581 - Psyr_3129 0.47 -0.1 3,752,581 - Psyr_3129 0.47 +1.7 3,752,581 - Psyr_3129 0.47 -0.9 3,752,581 - Psyr_3129 0.47 -0.1 3,752,581 - Psyr_3129 0.47 +1.7 3,752,582 + Psyr_3129 0.47 -1.3 3,752,662 - Psyr_3129 0.57 +0.2
Or see this region's nucleotide sequence