Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2072

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2071 and Psyr_2072 are separated by 395 nucleotidesPsyr_2072 and Psyr_2073 are separated by 86 nucleotides Psyr_2071: Psyr_2071 - outer membrane lipoprotein OprI, at 2,417,167 to 2,417,418 _2071 Psyr_2072: Psyr_2072 - conserved hypothetical protein, at 2,417,814 to 2,418,167 _2072 Psyr_2073: Psyr_2073 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 2,418,254 to 2,419,342 _2073 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2417.047 kb on + strandat 2417.083 kb on - strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.166 kb on - strandat 2417.166 kb on - strandat 2417.168 kb on + strandat 2417.168 kb on + strandat 2417.168 kb on + strandat 2417.253 kb on + strand, within Psyr_2071at 2417.350 kb on + strand, within Psyr_2071at 2417.351 kb on - strand, within Psyr_2071at 2417.451 kb on + strandat 2417.452 kb on - strandat 2417.486 kb on - strandat 2417.486 kb on - strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.492 kb on + strandat 2417.493 kb on - strandat 2417.505 kb on + strandat 2417.505 kb on + strandat 2417.505 kb on + strandat 2417.506 kb on - strandat 2417.506 kb on - strandat 2417.506 kb on - strandat 2417.508 kb on + strandat 2417.569 kb on + strandat 2417.702 kb on + strandat 2417.723 kb on + strandat 2417.740 kb on + strandat 2417.741 kb on - strandat 2417.741 kb on - strandat 2417.743 kb on + strandat 2417.743 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.956 kb on - strandat 2417.956 kb on - strand, within Psyr_2072at 2417.956 kb on - strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.967 kb on - strand, within Psyr_2072at 2417.974 kb on + strand, within Psyr_2072at 2417.975 kb on - strand, within Psyr_2072at 2417.975 kb on - strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.176 kb on - strandat 2418.176 kb on - strandat 2418.195 kb on - strandat 2418.255 kb on + strandat 2418.255 kb on + strandat 2418.255 kb on + strandat 2418.256 kb on - strandat 2418.603 kb on + strand, within Psyr_2073at 2418.603 kb on + strand, within Psyr_2073at 2418.604 kb on - strand, within Psyr_2073at 2418.604 kb on - strand, within Psyr_2073at 2418.873 kb on + strand, within Psyr_2073at 2419.047 kb on + strand, within Psyr_2073at 2419.047 kb on + strand, within Psyr_2073at 2419.066 kb on - strand, within Psyr_2073at 2419.114 kb on - strand, within Psyr_2073

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,417,047 + -2.8
2,417,083 - -2.0
2,417,165 + -1.8
2,417,165 + -3.0
2,417,165 + -2.2
2,417,165 + -3.0
2,417,165 + -1.0
2,417,166 - -3.4
2,417,166 - -2.4
2,417,168 + -1.0
2,417,168 + -0.0
2,417,168 + -0.6
2,417,253 + Psyr_2071 0.34 -2.8
2,417,350 + Psyr_2071 0.73 -3.0
2,417,351 - Psyr_2071 0.73 -1.4
2,417,451 + -2.4
2,417,452 - -0.6
2,417,486 - -2.4
2,417,486 - -1.3
2,417,489 + -1.0
2,417,489 + -1.0
2,417,489 + -1.6
2,417,489 + -0.6
2,417,489 + -1.4
2,417,489 + +1.6
2,417,489 + -1.0
2,417,490 - -1.0
2,417,490 - -1.0
2,417,490 - -2.4
2,417,490 - -2.0
2,417,490 - -1.8
2,417,490 - -1.8
2,417,490 - -3.0
2,417,490 - -1.6
2,417,490 - -1.4
2,417,492 + -1.0
2,417,493 - -1.7
2,417,505 + -1.3
2,417,505 + -0.0
2,417,505 + -0.4
2,417,506 - -1.0
2,417,506 - -2.0
2,417,506 - +0.6
2,417,508 + -0.5
2,417,569 + +1.0
2,417,702 + -2.8
2,417,723 + -1.6
2,417,740 + -1.4
2,417,741 - -0.6
2,417,741 - -3.0
2,417,743 + +1.0
2,417,743 + -2.5
2,417,811 + -1.8
2,417,811 + -2.2
2,417,811 + -1.2
2,417,811 + -2.6
2,417,811 + -1.6
2,417,811 + -0.0
2,417,811 + -2.6
2,417,812 - -2.0
2,417,812 - -0.7
2,417,812 - -1.7
2,417,812 - +1.1
2,417,956 - -2.8
2,417,956 - Psyr_2072 0.40 -0.5
2,417,956 - Psyr_2072 0.40 -1.0
2,417,964 + Psyr_2072 0.42 -3.7
2,417,964 + Psyr_2072 0.42 -0.4
2,417,964 + Psyr_2072 0.42 -3.0
2,417,964 + Psyr_2072 0.42 -2.5
2,417,964 + Psyr_2072 0.42 -2.8
2,417,964 + Psyr_2072 0.42 -3.4
2,417,964 + Psyr_2072 0.42 -2.4
2,417,964 + Psyr_2072 0.42 -2.4
2,417,965 - Psyr_2072 0.43 -0.0
2,417,965 - Psyr_2072 0.43 -0.4
2,417,965 - Psyr_2072 0.43 -2.0
2,417,965 - Psyr_2072 0.43 -0.6
2,417,965 - Psyr_2072 0.43 -2.0
2,417,965 - Psyr_2072 0.43 -0.0
2,417,965 - Psyr_2072 0.43 -0.0
2,417,965 - Psyr_2072 0.43 -0.7
2,417,965 - Psyr_2072 0.43 -0.0
2,417,966 + Psyr_2072 0.43 -3.9
2,417,966 + Psyr_2072 0.43 -2.6
2,417,966 + Psyr_2072 0.43 -1.9
2,417,967 - Psyr_2072 0.43 -0.6
2,417,974 + Psyr_2072 0.45 -2.8
2,417,975 - Psyr_2072 0.45 -1.0
2,417,975 - Psyr_2072 0.45 -1.4
2,418,111 + Psyr_2072 0.84 -3.9
2,418,111 + Psyr_2072 0.84 -1.6
2,418,111 + Psyr_2072 0.84 -2.2
2,418,111 + Psyr_2072 0.84 -2.0
2,418,111 + Psyr_2072 0.84 -1.3
2,418,111 + Psyr_2072 0.84 -2.9
2,418,112 - Psyr_2072 0.84 -2.5
2,418,112 - Psyr_2072 0.84 -1.7
2,418,112 - Psyr_2072 0.84 -0.0
2,418,112 - Psyr_2072 0.84 -0.3
2,418,112 - Psyr_2072 0.84 -1.0
2,418,112 - Psyr_2072 0.84 -2.4
2,418,112 - Psyr_2072 0.84 -1.6
2,418,123 + Psyr_2072 0.87 -0.9
2,418,123 + Psyr_2072 0.87 -0.8
2,418,123 + Psyr_2072 0.87 -1.0
2,418,123 + Psyr_2072 0.87 -2.0
2,418,176 - +0.6
2,418,176 - +0.8
2,418,195 - +0.3
2,418,255 + -1.4
2,418,255 + -2.2
2,418,255 + -0.6
2,418,256 - -1.6
2,418,603 + Psyr_2073 0.32 -2.8
2,418,603 + Psyr_2073 0.32 +2.0
2,418,604 - Psyr_2073 0.32 -0.0
2,418,604 - Psyr_2073 0.32 -0.8
2,418,873 + Psyr_2073 0.57 +1.0
2,419,047 + Psyr_2073 0.73 -0.3
2,419,047 + Psyr_2073 0.73 -1.8
2,419,066 - Psyr_2073 0.75 -1.6
2,419,114 - Psyr_2073 0.79 +1.4

Or see this region's nucleotide sequence