Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2007

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2005 and Psyr_2006 overlap by 7 nucleotidesPsyr_2006 and Psyr_2007 are separated by 3 nucleotidesPsyr_2007 and Psyr_2008 are separated by 12 nucleotidesPsyr_2008 and Psyr_2009 are separated by 259 nucleotides Psyr_2005: Psyr_2005 - succinate dehydrogenase subunit C, at 2,326,172 to 2,326,546 _2005 Psyr_2006: Psyr_2006 - succinate dehydrogenase subunit D, at 2,326,540 to 2,326,908 _2006 Psyr_2007: Psyr_2007 - succinate dehydrogenase subunit A, at 2,326,912 to 2,328,684 _2007 Psyr_2008: Psyr_2008 - succinate dehydrogenase subunit B, at 2,328,697 to 2,329,401 _2008 Psyr_2009: Psyr_2009 - 2-oxoglutarate dehydrogenase E1 component, at 2,329,661 to 2,332,492 _2009 Position (kb) 2326 2327 2328 2329Strain fitness (log2 ratio) -1 0 1at 2325.950 kb on + strandat 2326.026 kb on + strandat 2326.026 kb on + strandat 2326.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,325,950 + +0.3
2,326,026 + +0.8
2,326,026 + +1.2
2,326,034 + -0.7

Or see this region's nucleotide sequence