Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1394

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
1,574,687	-		Psyr_1393	0.40	-0.1
1,574,689	+		Psyr_1393	0.40	+0.4
1,574,690	-		Psyr_1393	0.40	-0.5
1,574,690	-		Psyr_1393	0.40	+0.2
1,574,710	-		Psyr_1393	0.42	+0.2
1,574,719	+		Psyr_1393	0.43	-0.1
1,574,719	+		Psyr_1393	0.43	-0.6
1,574,720	-		Psyr_1393	0.43	-2.2
1,574,720	-		Psyr_1393	0.43	-1.4
1,575,030	+		Psyr_1393	0.71	+1.2
1,575,031	-		Psyr_1393	0.72	+0.8
1,575,139	+		Psyr_1393	0.81	-0.8
1,575,206	+		Psyr_1393	0.88	-0.5
1,575,206	+		Psyr_1393	0.88	+1.5
1,575,206	+		Psyr_1393	0.88	-2.1
1,575,206	+		Psyr_1393	0.88	+0.6
1,575,207	-		Psyr_1393	0.88	+1.0
1,575,214	+		Psyr_1393	0.88	+0.2
1,575,214	+		Psyr_1393	0.88	+0.4
1,575,214	+		Psyr_1393	0.88	-0.8
1,575,215	-		Psyr_1393	0.88	-3.0
1,575,215	-		Psyr_1393	0.88	-1.8
1,575,362	+				+1.7
1,575,362	+				+0.8
1,575,418	+				-0.1
1,575,418	+				+0.5
1,575,418	+				+1.2
1,575,419	-				+0.8
1,575,422	+				-0.4
1,575,422	+				+0.1
1,575,422	+				-0.0
1,575,423	-				+0.4
1,575,423	-				+1.0
1,575,459	+				+0.5
1,575,459	+				+0.6
1,575,459	+				-0.3
1,575,459	+				+0.8
1,575,459	+				+2.1
1,575,460	-				-1.1
1,575,460	-				+1.6
1,575,460	-				-1.2
1,575,460	-				-0.1
1,575,460	-				-0.0
1,575,460	-				-0.6
1,575,548	-				-0.4
1,575,548	-				+0.2
1,575,564	+				+0.5
1,575,670	-				-1.6
1,575,784	-				-2.4
1,575,784	-				+1.5
1,575,897	+		Psyr_1394	0.12	-1.4
1,575,897	+		Psyr_1394	0.12	+0.6
1,575,897	+		Psyr_1394	0.12	-1.8
1,575,897	+		Psyr_1394	0.12	-1.6
1,575,897	+		Psyr_1394	0.12	-1.1
1,575,897	+		Psyr_1394	0.12	-1.3
1,575,897	+		Psyr_1394	0.12	+0.5
1,575,897	+		Psyr_1394	0.12	-1.6
1,575,897	+		Psyr_1394	0.12	-2.6
1,575,898	-		Psyr_1394	0.12	-1.4
1,575,898	-		Psyr_1394	0.12	-1.8
1,575,898	-				-0.2
1,575,898	-		Psyr_1394	0.12	-1.7
1,575,898	-		Psyr_1394	0.12	-1.8
1,575,898	-		Psyr_1394	0.12	-2.0
1,575,898	-		Psyr_1394	0.12	-0.8
1,575,898	-		Psyr_1394	0.12	-1.2
1,575,898	-		Psyr_1394	0.12	-0.3
1,575,898	-		Psyr_1394	0.12	+0.2
1,575,898	-		Psyr_1394	0.12	+0.8
1,576,012	+		Psyr_1394	0.18	+1.2
1,576,041	+		Psyr_1394	0.19	-0.4
1,576,042	-		Psyr_1394	0.19	-0.5
1,576,042	-		Psyr_1394	0.19	-0.8
1,576,042	-		Psyr_1394	0.19	-0.4
1,576,366	+		Psyr_1394	0.36	+1.2
1,576,367	-		Psyr_1394	0.36	-1.2
1,576,367	-		Psyr_1394	0.36	-3.3
1,576,367	-		Psyr_1394	0.36	-2.3
1,576,395	+		Psyr_1394	0.38	-3.0
1,576,396	-		Psyr_1394	0.38	-1.2
1,576,396	-		Psyr_1394	0.38	-0.3
1,576,476	+		Psyr_1394	0.42	+0.2
1,576,476	+		Psyr_1394	0.42	-1.2
1,576,477	-		Psyr_1394	0.42	-1.6
1,576,477	-		Psyr_1394	0.42	-3.2
1,576,524	-		Psyr_1394	0.45	-2.3
1,576,533	+		Psyr_1394	0.45	-0.4
1,576,533	+		Psyr_1394	0.45	-3.6
1,576,534	-		Psyr_1394	0.45	-0.8
1,576,659	+		Psyr_1394	0.52	-2.4
1,576,659	+		Psyr_1394	0.52	-1.4
1,576,659	+		Psyr_1394	0.52	-1.4
1,576,713	+		Psyr_1394	0.55	+0.0
1,576,713	+		Psyr_1394	0.55	-0.7
1,576,713	+		Psyr_1394	0.55	+0.2
1,576,713	+		Psyr_1394	0.55	-2.2
1,576,713	+		Psyr_1394	0.55	-2.3
1,576,713	+		Psyr_1394	0.55	-2.6
1,576,713	+		Psyr_1394	0.55	-1.6
1,576,714	-		Psyr_1394	0.55	-2.9
1,576,714	-		Psyr_1394	0.55	-0.8
1,576,714	-		Psyr_1394	0.55	-2.2
1,576,714	-		Psyr_1394	0.55	+0.5
1,576,714	-		Psyr_1394	0.55	-1.0
1,577,004	-		Psyr_1394	0.70	-1.8
1,577,180	+		Psyr_1394	0.79	-0.6
1,577,181	-		Psyr_1394	0.79	-1.4
1,577,181	-		Psyr_1394	0.79	-0.8
1,577,235	+		Psyr_1394	0.82	-0.8
1,577,235	+		Psyr_1394	0.82	-1.2
1,577,235	+		Psyr_1394	0.82	-2.2
1,577,235	+		Psyr_1394	0.82	-2.2
1,577,235	+		Psyr_1394	0.82	-0.8
1,577,235	+		Psyr_1394	0.82	-2.6
1,577,236	-		Psyr_1394	0.82	+0.2
1,577,236	-		Psyr_1394	0.82	-1.9
1,577,236	-		Psyr_1394	0.82	-0.8
1,577,236	-		Psyr_1394	0.82	-1.7
1,577,301	+		Psyr_1394	0.86	-1.1
1,577,406	+				-1.8
1,577,406	+				-0.8
1,577,406	+				-1.2
1,577,407	-				+0.9
1,577,407	-				-0.8
1,577,407	-				-0.7
1,577,407	-				+1.5
1,577,407	-				-2.3
1,577,407	-				-0.8
1,577,407	-				-1.0
1,577,407	-				-1.1
1,577,548	+				-0.4
1,577,549	-				-0.9
1,577,549	-				-2.4
1,577,549	-				-2.4
1,577,549	-				+1.2
1,577,552	+				-1.4
1,577,568	+				-1.6
1,577,568	+				-0.4
1,577,568	+				-1.8
1,577,568	+				+1.6
1,577,568	+				-1.1
1,577,568	+				+0.1
1,577,568	+				+1.2
1,577,569	-				-2.2
1,577,569	-				+2.0
1,577,569	-				-1.8
1,577,569	-				-1.4
1,577,569	-				+0.9
1,577,569	-				+0.8
1,577,569	-				+0.2
1,577,569	-				+0.7
1,577,569	-				+1.4
1,577,993	+		Psyr_1395	0.25	-0.6
1,577,993	+		Psyr_1395	0.25	-2.2
1,577,993	+		Psyr_1395	0.25	-0.2
1,577,993	+		Psyr_1395	0.25	-1.4
1,577,993	+		Psyr_1395	0.25	-0.3
1,577,993	+		Psyr_1395	0.25	-0.8
1,577,994	-		Psyr_1395	0.25	-0.4
1,577,994	-		Psyr_1395	0.25	+0.8
1,577,994	-		Psyr_1395	0.25	+1.2
1,577,994	-		Psyr_1395	0.25	+1.0
1,577,994	-		Psyr_1395	0.25	-0.9
1,577,994	-		Psyr_1395	0.25	+0.2
1,577,994	-		Psyr_1395	0.25	+0.2
1,577,994	-		Psyr_1395	0.25	-3.4
1,577,994	-		Psyr_1395	0.25	-0.2
1,577,994	-		Psyr_1395	0.25	-0.6
1,578,128	+		Psyr_1395	0.35	+0.1
1,578,128	+		Psyr_1395	0.35	-1.6
1,578,129	-		Psyr_1395	0.35	+1.1
1,578,129	-		Psyr_1395	0.35	+0.0
1,578,132	-		Psyr_1395	0.36	-1.4
1,578,139	+		Psyr_1395	0.36	-0.2
1,578,139	+		Psyr_1395	0.36	-0.4
1,578,139	+		Psyr_1395	0.36	+0.2
1,578,139	+		Psyr_1395	0.36	-0.3
1,578,140	-		Psyr_1395	0.36	-0.1
1,578,140	-		Psyr_1395	0.36	-0.6