Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0805

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
909,937	+		Psyr_0803	0.87	+0.5
909,937	+		Psyr_0803	0.87	-0.3
909,937	+		Psyr_0803	0.87	+0.3
909,938	-		Psyr_0803	0.87	-1.3
909,938	-		Psyr_0803	0.87	-2.5
909,938	-		Psyr_0803	0.87	-1.3
909,938	-		Psyr_0803	0.87	-1.0
909,938	-		Psyr_0803	0.87	-0.5
909,964	+		Psyr_0803	0.90	-1.4
909,964	+		Psyr_0803	0.90	+0.5
909,964	+		Psyr_0803	0.90	+0.7
909,965	-		Psyr_0803	0.90	-1.3
910,199	+		Psyr_0804	0.17	-0.2
910,199	+		Psyr_0804	0.17	-0.7
910,199	+		Psyr_0804	0.17	-0.3
910,200	-		Psyr_0804	0.17	-1.2
910,200	-		Psyr_0804	0.17	-1.7
910,286	+		Psyr_0804	0.28	+0.5
910,287	-		Psyr_0804	0.28	+0.8
910,287	-		Psyr_0804	0.28	-0.5
910,514	+		Psyr_0804	0.58	+0.5
910,514	+		Psyr_0804	0.58	-0.7
910,515	-		Psyr_0804	0.58	-1.3
910,515	-		Psyr_0804	0.58	-0.6
910,515	-		Psyr_0804	0.58	-0.3
910,563	+		Psyr_0804	0.65	-0.1
910,563	+		Psyr_0804	0.65	+3.0
910,564	-		Psyr_0804	0.65	-1.7
910,564	-		Psyr_0804	0.65	-2.5
910,564	-		Psyr_0804	0.65	+2.1
910,600	+		Psyr_0804	0.69	+1.2
910,601	-		Psyr_0804	0.70	-0.3
910,606	+		Psyr_0804	0.70	+2.2
910,606	+		Psyr_0804	0.70	+1.0
910,607	-		Psyr_0804	0.70	-1.3
910,607	-		Psyr_0804	0.70	+0.6
910,869	+				+1.1
910,870	-				-1.1
910,870	-				+0.7
910,870	-				+0.3
910,968	+		Psyr_0805	0.13	+1.2
910,968	+		Psyr_0805	0.13	+0.1
911,022	+		Psyr_0805	0.18	-2.0
911,022	+		Psyr_0805	0.18	+0.6
911,023	-		Psyr_0805	0.18	+1.5
911,023	-		Psyr_0805	0.18	-2.7
911,023	-		Psyr_0805	0.18	-1.3
911,023	-		Psyr_0805	0.18	+0.9
911,068	+		Psyr_0805	0.22	-2.0
911,068	+		Psyr_0805	0.22	+1.7
911,068	+		Psyr_0805	0.22	+0.8
911,068	+		Psyr_0805	0.22	+0.5
911,069	-		Psyr_0805	0.22	-2.0
911,069	-		Psyr_0805	0.22	+1.5
911,069	-		Psyr_0805	0.22	+0.3
911,069	-		Psyr_0805	0.22	+1.6
911,069	-		Psyr_0805	0.22	+0.3
911,069	-		Psyr_0805	0.22	+0.5
911,069	-		Psyr_0805	0.22	-0.1
911,069	-		Psyr_0805	0.22	+0.8
911,069	-		Psyr_0805	0.22	+3.1
911,240	+		Psyr_0805	0.38	-0.7
911,241	-		Psyr_0805	0.38	-0.3
911,495	+		Psyr_0805	0.61	+1.3
911,495	+		Psyr_0805	0.61	-2.3
911,535	+		Psyr_0805	0.65	+1.1
911,536	-		Psyr_0805	0.65	+0.2
911,536	-		Psyr_0805	0.65	-0.5
911,612	+		Psyr_0805	0.72	-1.1
911,612	+		Psyr_0805	0.72	-0.1
911,612	+		Psyr_0805	0.72	-3.0
911,612	+		Psyr_0805	0.72	-0.2
911,612	+		Psyr_0805	0.72	-1.3
911,612	+		Psyr_0805	0.72	+1.5
911,613	-		Psyr_0805	0.72	-0.5
911,613	-		Psyr_0805	0.72	-0.7
911,613	-		Psyr_0805	0.72	+0.3
911,613	-		Psyr_0805	0.72	-0.0
911,711	+		Psyr_0805	0.81	+1.7
911,712	-		Psyr_0805	0.81	+0.0
911,712	-		Psyr_0805	0.81	+1.3
911,712	-		Psyr_0805	0.81	+0.2
911,712	-		Psyr_0805	0.81	-0.8
911,782	+		Psyr_0805	0.87	-2.3
911,782	+		Psyr_0805	0.87	+0.6
911,783	-		Psyr_0805	0.88	-3.0
911,783	-		Psyr_0805	0.88	-1.7
911,783	-		Psyr_0805	0.88	-1.1
911,783	-		Psyr_0805	0.88	+1.6
911,783	-		Psyr_0805	0.88	-0.0
911,783	-		Psyr_0805	0.88	-0.7
911,916	+				-0.7
911,916	+				+0.5
911,916	+				-0.0
911,917	-				+1.0
911,917	-				+2.1
911,917	-				-1.7
911,925	+				+0.9
911,925	+				+0.5
911,957	+				+0.9
911,957	+				-1.3
911,957	+				+1.2
911,957	+				-0.3
911,957	+				-0.9
911,957	+				+0.9
911,957	+				-0.7
911,957	+				-0.1
911,957	+				+0.6
911,958	-				+0.3
911,958	-				+0.5
911,958	-				-1.7
911,958	-				-3.4
911,958	-				+0.8
911,958	-				-0.7
911,958	-				+0.5
912,096	+		Psyr_0806	0.19	+1.9
912,096	+		Psyr_0806	0.19	+0.6
912,096	+		Psyr_0806	0.19	-2.5
912,096	+		Psyr_0806	0.19	+1.3
912,301	+		Psyr_0806	0.40	+0.2
912,301	+		Psyr_0806	0.40	-0.5
912,301	+		Psyr_0806	0.40	+0.1
912,302	-		Psyr_0806	0.40	-1.2
912,302	-		Psyr_0806	0.40	+0.2
912,302	-		Psyr_0806	0.40	+1.6
912,302	-		Psyr_0806	0.40	-2.5
912,302	-		Psyr_0806	0.40	+0.7
912,476	+		Psyr_0806	0.59	+1.0
912,476	+		Psyr_0806	0.59	+0.3
912,477	-		Psyr_0806	0.59	-0.7
912,477	-		Psyr_0806	0.59	+1.1
912,589	+		Psyr_0806	0.71	-0.6
912,589	+		Psyr_0806	0.71	-2.7
912,592	+		Psyr_0806	0.71	+0.5
912,592	+		Psyr_0806	0.71	-1.4
912,593	-		Psyr_0806	0.71	-0.4
912,593	-		Psyr_0806	0.71	-2.0
912,593	-		Psyr_0806	0.71	+0.6
912,728	+		Psyr_0806	0.85	-0.5
912,728	+		Psyr_0806	0.85	-1.0
912,728	+		Psyr_0806	0.85	-1.0
912,728	+		Psyr_0806	0.85	-0.7
912,729	-		Psyr_0806	0.85	+0.3
912,761	+		Psyr_0806	0.89	+1.0
912,763	+		Psyr_0806	0.89	+2.3
912,763	+		Psyr_0806	0.89	-2.1
912,763	+		Psyr_0806	0.89	-1.0
912,763	+		Psyr_0806	0.89	+2.9
912,763	+		Psyr_0806	0.89	+1.7
912,763	+		Psyr_0806	0.89	-2.0
912,763	+		Psyr_0806	0.89	+0.4
912,763	+		Psyr_0806	0.89	-0.0
912,763	+		Psyr_0806	0.89	-0.7
912,764	-		Psyr_0806	0.89	-0.3
912,764	-		Psyr_0806	0.89	-1.7
912,764	-		Psyr_0806	0.89	+0.7
912,862	+				+0.9
912,862	+				-1.7
912,866	+				-0.3
912,866	+				-1.3
912,866	+				+0.3
912,866	+				-0.7
912,866	+				-1.5
912,867	-				-2.3
912,867	-				+0.3
912,867	-				-3.4
912,867	-				-0.7
912,867	-				-0.7
912,873	+				-0.0
912,873	+				-0.7
912,873	+				-0.3
912,873	+				-0.4
912,873	+				+0.7
912,873	+				-2.9
912,874	-				-1.3
912,874	-				-1.7