Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0594

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0592 and Psyr_0593 overlap by 1 nucleotidesPsyr_0593 and Psyr_0594 are separated by 189 nucleotidesPsyr_0594 and Psyr_0595 are separated by 26 nucleotides Psyr_0592: Psyr_0592 - Integrase, catalytic region, at 680,557 to 681,393 _0592 Psyr_0593: Psyr_0593 - ISPsy9, transposase OrfA, at 681,393 to 681,932 _0593 Psyr_0594: Psyr_0594 - NH(3)-dependent NAD(+) synthetase, at 682,122 to 682,949 _0594 Psyr_0595: Psyr_0595 - Nicotinate phosphoribosyltransferase, at 682,976 to 684,199 _0595 Position (kb) 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 682.092 kb on - strandat 682.964 kb on - strandat 682.967 kb on + strandat 682.968 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.032 kb on - strandat 683.032 kb on - strandat 683.123 kb on + strand, within Psyr_0595at 683.124 kb on - strand, within Psyr_0595at 683.373 kb on + strand, within Psyr_0595at 683.374 kb on - strand, within Psyr_0595at 683.374 kb on - strand, within Psyr_0595at 683.742 kb on + strand, within Psyr_0595at 683.743 kb on - strand, within Psyr_0595at 683.743 kb on - strand, within Psyr_0595

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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682,092 - +0.4
682,964 - +1.4
682,967 + -1.8
682,968 - +1.2
683,031 + +0.8
683,032 - -0.0
683,032 - -0.3
683,032 - +1.8
683,123 + Psyr_0595 0.12 -1.3
683,124 - Psyr_0595 0.12 -0.2
683,373 + Psyr_0595 0.32 +0.6
683,374 - Psyr_0595 0.33 +0.9
683,374 - Psyr_0595 0.33 +0.6
683,742 + Psyr_0595 0.63 +0.7
683,743 - Psyr_0595 0.63 -1.0
683,743 - Psyr_0595 0.63 +0.7

Or see this region's nucleotide sequence