Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0360

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0359 and Psyr_0360 are separated by 197 nucleotidesPsyr_0360 and Psyr_0361 are separated by 12 nucleotidesPsyr_0361 and Psyr_0362 overlap by 4 nucleotides Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414 _0359 Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565 _0360 Psyr_0361: Psyr_0361 - conserved hypothetical protein, at 386,578 to 387,285 _0361 Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848 _0362 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 384.955 kb on - strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.245 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.434 kb on - strandat 385.434 kb on - strandat 385.450 kb on - strandat 385.451 kb on + strandat 385.451 kb on + strandat 385.451 kb on + strandat 385.452 kb on - strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.504 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.560 kb on - strandat 385.619 kb on - strandat 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.924 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.563 kb on + strandat 386.563 kb on + strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.829 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.850 kb on + strand, within Psyr_0361at 386.910 kb on - strand, within Psyr_0361at 386.910 kb on - strand, within Psyr_0361at 387.069 kb on + strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.240 kb on - strandat 387.240 kb on - strandat 387.240 kb on - strandat 387.272 kb on - strandat 387.272 kb on - strandat 387.272 kb on - strandat 387.390 kb on + strand, within Psyr_0362at 387.390 kb on + strand, within Psyr_0362at 387.390 kb on + strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.408 kb on - strand, within Psyr_0362

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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384,639 + Psyr_0359 0.22 +2.8
384,639 + Psyr_0359 0.22 -0.9
384,640 - Psyr_0359 0.22 -0.6
384,640 - Psyr_0359 0.22 -0.3
384,909 + Psyr_0359 0.49 -2.9
384,909 + Psyr_0359 0.49 -1.4
384,909 + Psyr_0359 0.49 -0.8
384,910 - Psyr_0359 0.49 +0.1
384,910 - Psyr_0359 0.49 -1.9
384,955 - Psyr_0359 0.54 +0.8
385,037 + Psyr_0359 0.62 -1.1
385,038 - Psyr_0359 0.62 -2.1
385,038 - Psyr_0359 0.62 -0.6
385,038 - Psyr_0359 0.62 +1.0
385,245 + Psyr_0359 0.83 -2.7
385,308 + Psyr_0359 0.89 -0.6
385,308 + Psyr_0359 0.89 -1.4
385,308 + Psyr_0359 0.89 -3.4
385,308 + Psyr_0359 0.89 +0.4
385,308 + Psyr_0359 0.89 -1.1
385,308 + Psyr_0359 0.89 -2.6
385,308 + Psyr_0359 0.89 +0.1
385,308 + Psyr_0359 0.89 -1.9
385,308 + Psyr_0359 0.89 +0.7
385,308 + Psyr_0359 0.89 +1.3
385,308 + Psyr_0359 0.89 -0.5
385,308 + Psyr_0359 0.89 +0.2
385,308 + Psyr_0359 0.89 -0.1
385,308 + Psyr_0359 0.89 +1.2
385,308 + Psyr_0359 0.89 +0.6
385,308 + Psyr_0359 0.89 -0.1
385,308 + Psyr_0359 0.89 +0.4
385,308 + Psyr_0359 0.89 +0.4
385,308 + Psyr_0359 0.89 -0.6
385,309 - Psyr_0359 0.89 +3.9
385,309 - Psyr_0359 0.89 +0.6
385,309 - Psyr_0359 0.89 +0.9
385,309 - Psyr_0359 0.89 +1.2
385,309 - Psyr_0359 0.89 +2.2
385,309 - Psyr_0359 0.89 -0.2
385,309 - Psyr_0359 0.89 +0.1
385,309 - Psyr_0359 0.89 +0.7
385,309 - Psyr_0359 0.89 -0.1
385,309 - Psyr_0359 0.89 +0.4
385,309 - Psyr_0359 0.89 +1.1
385,312 + Psyr_0359 0.90 -0.1
385,312 + Psyr_0359 0.90 -0.2
385,312 + Psyr_0359 0.90 -0.6
385,434 - -1.9
385,434 - -0.6
385,450 - -0.2
385,451 + -0.6
385,451 + +1.6
385,451 + +0.4
385,452 - -1.6
385,478 + +0.1
385,478 + +0.4
385,478 + -0.7
385,478 + +0.2
385,478 + +1.2
385,478 + -0.1
385,478 + -1.9
385,478 + -0.6
385,478 + +0.7
385,479 - +0.2
385,479 - -1.9
385,479 - -2.9
385,479 - +0.2
385,479 - +1.0
385,479 - +1.2
385,479 - +1.4
385,479 - +3.0
385,504 + -3.3
385,559 + -1.1
385,559 + -1.4
385,559 + +0.7
385,559 + -2.9
385,559 + -0.4
385,559 + -2.0
385,559 + -0.1
385,560 - +1.7
385,619 - -2.1
385,858 + Psyr_0360 0.26 -0.5
385,858 + Psyr_0360 0.26 +1.4
385,858 + Psyr_0360 0.26 +1.3
385,858 + Psyr_0360 0.26 +2.2
385,858 + Psyr_0360 0.26 -2.5
385,858 + Psyr_0360 0.26 -1.6
385,858 + Psyr_0360 0.26 -0.9
385,858 + Psyr_0360 0.26 +0.4
385,858 + Psyr_0360 0.26 -0.3
385,858 + Psyr_0360 0.26 +3.7
385,858 + Psyr_0360 0.26 +0.1
385,858 + Psyr_0360 0.26 -0.4
385,858 + Psyr_0360 0.26 -1.9
385,858 + Psyr_0360 0.26 -1.1
385,859 - Psyr_0360 0.26 -1.4
385,859 - Psyr_0360 0.26 -1.7
385,859 - Psyr_0360 0.26 -0.1
385,859 - Psyr_0360 0.26 -1.1
385,859 - Psyr_0360 0.26 +1.7
385,859 - Psyr_0360 0.26 +1.6
385,859 - Psyr_0360 0.26 +0.9
385,859 - Psyr_0360 0.26 +2.3
385,859 - Psyr_0360 0.26 -0.1
385,924 + Psyr_0360 0.33 +0.1
386,050 + Psyr_0360 0.46 +2.8
386,050 + Psyr_0360 0.46 -0.7
386,140 + Psyr_0360 0.55 +0.9
386,140 + Psyr_0360 0.55 -0.3
386,140 + Psyr_0360 0.55 +1.9
386,140 + Psyr_0360 0.55 +0.2
386,140 + Psyr_0360 0.55 +0.3
386,140 + Psyr_0360 0.55 +2.4
386,140 + Psyr_0360 0.55 +0.8
386,141 - Psyr_0360 0.55 +0.8
386,141 - Psyr_0360 0.55 +0.9
386,314 + Psyr_0360 0.74 -0.1
386,314 + Psyr_0360 0.74 -0.9
386,315 - Psyr_0360 0.74 +0.8
386,315 - Psyr_0360 0.74 -0.6
386,419 + Psyr_0360 0.85 +0.4
386,419 + Psyr_0360 0.85 +0.3
386,419 + Psyr_0360 0.85 -0.7
386,420 - Psyr_0360 0.85 +0.7
386,420 - Psyr_0360 0.85 +1.0
386,420 - Psyr_0360 0.85 +0.7
386,420 - Psyr_0360 0.85 +0.6
386,420 - Psyr_0360 0.85 +0.6
386,420 - Psyr_0360 0.85 -0.1
386,420 - Psyr_0360 0.85 -0.1
386,563 + -1.9
386,563 + -1.4
386,564 - -0.6
386,564 - -2.6
386,564 - -0.9
386,564 - -0.4
386,829 + Psyr_0361 0.35 -1.3
386,836 + Psyr_0361 0.36 -0.4
386,836 + Psyr_0361 0.36 +1.4
386,836 + Psyr_0361 0.36 +0.9
386,836 + Psyr_0361 0.36 -0.9
386,837 - Psyr_0361 0.37 +0.4
386,837 - Psyr_0361 0.37 -0.1
386,837 - Psyr_0361 0.37 -0.9
386,837 - Psyr_0361 0.37 -0.4
386,850 + Psyr_0361 0.38 -0.6
386,910 - Psyr_0361 0.47 -0.2
386,910 - Psyr_0361 0.47 +0.4
387,069 + Psyr_0361 0.69 -0.6
387,199 + Psyr_0361 0.88 -2.4
387,199 + Psyr_0361 0.88 +0.6
387,200 - Psyr_0361 0.88 -2.4
387,200 - Psyr_0361 0.88 -0.3
387,200 - Psyr_0361 0.88 +0.9
387,200 - Psyr_0361 0.88 -0.1
387,200 - Psyr_0361 0.88 +1.8
387,235 + +1.0
387,235 + +1.2
387,235 + +0.6
387,235 + -1.1
387,235 + +0.4
387,235 + +0.0
387,236 - +1.0
387,236 - +0.3
387,236 - +0.2
387,236 - -2.0
387,236 - +0.2
387,236 - -0.8
387,236 - +1.6
387,239 + -1.4
387,239 + -0.7
387,239 + -0.6
387,239 + +0.1
387,239 + +0.6
387,240 - +0.3
387,240 - -0.9
387,240 - -0.0
387,272 - -3.3
387,272 - -1.1
387,272 - -1.7
387,390 + Psyr_0362 0.19 -2.1
387,390 + Psyr_0362 0.19 -0.8
387,390 + Psyr_0362 0.19 -0.6
387,391 - Psyr_0362 0.19 +0.1
387,391 - Psyr_0362 0.19 -0.2
387,391 - Psyr_0362 0.19 -0.1
387,391 - Psyr_0362 0.19 +1.4
387,391 - Psyr_0362 0.19 -2.6
387,394 + Psyr_0362 0.20 +0.4
387,394 + Psyr_0362 0.20 -2.1
387,394 + Psyr_0362 0.20 -2.9
387,395 - Psyr_0362 0.20 +1.4
387,395 - Psyr_0362 0.20 +1.0
387,395 - Psyr_0362 0.20 +1.7
387,395 - Psyr_0362 0.20 -0.2
387,395 - Psyr_0362 0.20 -2.6
387,395 - Psyr_0362 0.20 -0.1
387,407 + Psyr_0362 0.22 -0.0
387,407 + Psyr_0362 0.22 +0.1
387,407 + Psyr_0362 0.22 +1.2
387,407 + Psyr_0362 0.22 +2.5
387,408 - Psyr_0362 0.22 +1.3

Or see this region's nucleotide sequence