Experiment: Fusidic 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_602 and Pf6N2E2_603 overlap by 4 nucleotides Pf6N2E2_603 and Pf6N2E2_604 are separated by 13 nucleotides Pf6N2E2_604 and Pf6N2E2_605 are separated by 403 nucleotides
Pf6N2E2_602 - FIG00954117: hypothetical protein, at 677,015 to 677,275
_602
Pf6N2E2_603 - FIG00953934: hypothetical protein, at 677,272 to 678,102
_603
Pf6N2E2_604 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 678,116 to 680,773
_604
Pf6N2E2_605 - FIG002465: BNR repeat protein, at 681,177 to 682,214
_605
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.338 kb on + strand at 677.339 kb on - strand at 677.408 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 678.031 kb on + strand at 678.032 kb on - strand at 678.061 kb on - strand at 678.067 kb on - strand at 678.070 kb on + strand at 678.070 kb on + strand at 678.070 kb on + strand at 678.071 kb on - strand at 678.071 kb on - strand at 678.071 kb on - strand at 678.080 kb on - strand at 678.100 kb on + strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.101 kb on - strand at 678.143 kb on + strand at 678.155 kb on + strand at 678.170 kb on + strand at 678.171 kb on - strand at 678.353 kb on + strand at 678.354 kb on - strand at 678.462 kb on - strand, within Pf6N2E2_604 at 678.462 kb on - strand, within Pf6N2E2_604 at 678.521 kb on + strand, within Pf6N2E2_604 at 678.521 kb on + strand, within Pf6N2E2_604 at 678.522 kb on - strand, within Pf6N2E2_604 at 678.525 kb on - strand, within Pf6N2E2_604 at 678.525 kb on - strand, within Pf6N2E2_604 at 678.686 kb on + strand, within Pf6N2E2_604 at 678.686 kb on + strand, within Pf6N2E2_604 at 678.687 kb on - strand, within Pf6N2E2_604 at 678.687 kb on - strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.773 kb on + strand, within Pf6N2E2_604 at 678.774 kb on - strand, within Pf6N2E2_604 at 678.774 kb on - strand, within Pf6N2E2_604 at 678.852 kb on + strand, within Pf6N2E2_604 at 678.853 kb on - strand, within Pf6N2E2_604 at 678.854 kb on + strand, within Pf6N2E2_604 at 678.855 kb on - strand, within Pf6N2E2_604 at 678.855 kb on - strand, within Pf6N2E2_604 at 678.866 kb on + strand, within Pf6N2E2_604 at 678.884 kb on - strand, within Pf6N2E2_604 at 678.884 kb on - strand, within Pf6N2E2_604 at 678.884 kb on - strand at 678.940 kb on + strand, within Pf6N2E2_604 at 678.941 kb on - strand, within Pf6N2E2_604 at 678.941 kb on - strand, within Pf6N2E2_604 at 679.028 kb on + strand, within Pf6N2E2_604 at 679.028 kb on + strand, within Pf6N2E2_604 at 679.172 kb on + strand, within Pf6N2E2_604 at 679.172 kb on + strand, within Pf6N2E2_604 at 679.259 kb on + strand, within Pf6N2E2_604 at 679.260 kb on - strand, within Pf6N2E2_604 at 679.352 kb on + strand, within Pf6N2E2_604 at 679.352 kb on + strand, within Pf6N2E2_604 at 679.353 kb on - strand, within Pf6N2E2_604 at 679.465 kb on + strand, within Pf6N2E2_604 at 679.493 kb on + strand, within Pf6N2E2_604 at 679.494 kb on - strand, within Pf6N2E2_604 at 679.781 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.159 kb on + strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.160 kb on - strand, within Pf6N2E2_604 at 680.771 kb on + strand at 680.772 kb on - strand at 680.949 kb on + strand at 680.949 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.988 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.037 kb on - strand at 681.054 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.110 kb on - strand at 681.136 kb on + strand at 681.137 kb on - strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.145 kb on + strand at 681.145 kb on + strand at 681.146 kb on - strand at 681.146 kb on - strand at 681.161 kb on + strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.310 kb on - strand, within Pf6N2E2_605 at 681.409 kb on - strand, within Pf6N2E2_605
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.3 mg/ml remove 677,199 - Pf6N2E2_602 0.70 +0.7 677,199 - Pf6N2E2_602 0.70 +0.5 677,338 + +0.9 677,339 - +1.5 677,408 - Pf6N2E2_603 0.16 +0.6 677,606 - Pf6N2E2_603 0.40 -2.2 677,606 - Pf6N2E2_603 0.40 -0.4 677,606 - Pf6N2E2_603 0.40 -1.8 677,606 - Pf6N2E2_603 0.40 -0.4 678,031 + -1.0 678,032 - -0.4 678,061 - -0.3 678,067 - -0.1 678,070 + -1.7 678,070 + -0.6 678,070 + +0.0 678,071 - -0.4 678,071 - +0.8 678,071 - +0.4 678,080 - +0.2 678,100 + -0.7 678,101 - +0.5 678,101 - +0.7 678,101 - +1.5 678,101 - +0.6 678,143 + -1.1 678,155 + -0.8 678,170 + +0.9 678,171 - -0.2 678,353 + +0.2 678,354 - +1.0 678,462 - Pf6N2E2_604 0.13 +0.6 678,462 - Pf6N2E2_604 0.13 +0.3 678,521 + Pf6N2E2_604 0.15 +1.1 678,521 + Pf6N2E2_604 0.15 +0.6 678,522 - Pf6N2E2_604 0.15 +1.3 678,525 - Pf6N2E2_604 0.15 -0.6 678,525 - Pf6N2E2_604 0.15 +0.0 678,686 + Pf6N2E2_604 0.21 -0.7 678,686 + Pf6N2E2_604 0.21 +0.3 678,687 - Pf6N2E2_604 0.21 +0.6 678,687 - Pf6N2E2_604 0.21 -0.0 678,773 + Pf6N2E2_604 0.25 +0.3 678,773 + Pf6N2E2_604 0.25 +1.1 678,773 + Pf6N2E2_604 0.25 +0.6 678,774 - Pf6N2E2_604 0.25 +3.2 678,774 - Pf6N2E2_604 0.25 -0.5 678,852 + Pf6N2E2_604 0.28 -1.0 678,853 - Pf6N2E2_604 0.28 +0.7 678,854 + Pf6N2E2_604 0.28 +0.5 678,855 - Pf6N2E2_604 0.28 +0.0 678,855 - Pf6N2E2_604 0.28 +0.4 678,866 + Pf6N2E2_604 0.28 +1.9 678,884 - Pf6N2E2_604 0.29 +1.2 678,884 - Pf6N2E2_604 0.29 +1.6 678,884 - +1.9 678,940 + Pf6N2E2_604 0.31 -1.7 678,941 - Pf6N2E2_604 0.31 +0.2 678,941 - Pf6N2E2_604 0.31 +0.9 679,028 + Pf6N2E2_604 0.34 +0.6 679,028 + Pf6N2E2_604 0.34 +3.2 679,172 + Pf6N2E2_604 0.40 -0.1 679,172 + Pf6N2E2_604 0.40 +0.6 679,259 + Pf6N2E2_604 0.43 +1.1 679,260 - Pf6N2E2_604 0.43 -2.3 679,352 + Pf6N2E2_604 0.47 +0.2 679,352 + Pf6N2E2_604 0.47 -0.1 679,353 - Pf6N2E2_604 0.47 +0.4 679,465 + Pf6N2E2_604 0.51 +0.7 679,493 + Pf6N2E2_604 0.52 +1.1 679,494 - Pf6N2E2_604 0.52 +0.2 679,781 + Pf6N2E2_604 0.63 -0.9 680,159 + Pf6N2E2_604 0.77 +0.6 680,159 + Pf6N2E2_604 0.77 -0.2 680,159 + Pf6N2E2_604 0.77 +0.0 680,160 - Pf6N2E2_604 0.77 +1.0 680,160 - Pf6N2E2_604 0.77 +0.7 680,160 - Pf6N2E2_604 0.77 +0.0 680,771 + +0.6 680,772 - +0.5 680,949 + -0.5 680,949 + -1.1 680,964 + +0.1 680,964 + -0.7 680,964 + +0.2 680,965 - +0.1 680,965 - -1.4 680,965 - +0.9 680,965 - +0.9 680,965 - +0.5 680,988 + +0.0 681,031 + -0.6 681,031 + -0.3 681,031 + +0.7 681,031 + +0.3 681,037 - +0.3 681,054 + -0.8 681,074 + -0.7 681,074 + -1.2 681,074 + -0.5 681,074 + -0.1 681,075 - +0.9 681,075 - +0.8 681,075 - +0.1 681,110 - -0.4 681,136 + -1.4 681,137 - -0.1 681,142 + +0.4 681,142 + -1.2 681,142 + -0.6 681,142 + +0.9 681,143 - -0.6 681,143 - -0.8 681,143 - +0.5 681,143 - +0.9 681,143 - -0.4 681,145 + +0.3 681,145 + +0.3 681,146 - -1.6 681,146 - +1.4 681,161 + +1.0 681,162 - -0.3 681,162 - +0.3 681,162 - -0.4 681,162 - -2.8 681,310 - Pf6N2E2_605 0.13 -0.2 681,409 - Pf6N2E2_605 0.22 +0.2
Or see this region's nucleotide sequence