Experiment: Fusidic 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4607 and Pf6N2E2_4608 are separated by 85 nucleotides Pf6N2E2_4608 and Pf6N2E2_4609 overlap by 1 nucleotides Pf6N2E2_4609 and Pf6N2E2_4610 are separated by 293 nucleotides
Pf6N2E2_4607 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 5,332,816 to 5,333,322
_4607
Pf6N2E2_4608 - Putative Holliday junction resolvase YggF, at 5,333,408 to 5,333,845
_4608
Pf6N2E2_4609 - UPF0301 protein YqgE, at 5,333,845 to 5,334,414
_4609
Pf6N2E2_4610 - Mobile element protein, at 5,334,708 to 5,335,877
_4610
Position (kb)
5333
5334
5335 Strain fitness (log2 ratio)
-2
-1
0
1 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.136 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.368 kb on - strand at 5333.374 kb on - strand at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.324 kb on - strand, within Pf6N2E2_4609 at 5334.393 kb on - strand at 5334.393 kb on - strand at 5334.393 kb on - strand at 5334.422 kb on - strand at 5334.600 kb on - strand at 5334.615 kb on - strand at 5334.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.3 mg/ml remove 5,333,036 - Pf6N2E2_4607 0.43 -2.1 5,333,036 - Pf6N2E2_4607 0.43 -0.4 5,333,036 - Pf6N2E2_4607 0.43 -1.8 5,333,036 - Pf6N2E2_4607 0.43 +0.2 5,333,036 - Pf6N2E2_4607 0.43 +0.5 5,333,136 - Pf6N2E2_4607 0.63 -0.2 5,333,232 - Pf6N2E2_4607 0.82 +0.6 5,333,232 - Pf6N2E2_4607 0.82 +0.1 5,333,232 - Pf6N2E2_4607 0.82 -1.1 5,333,368 - +0.3 5,333,374 - -0.2 5,334,324 - Pf6N2E2_4609 0.84 -0.7 5,334,324 - Pf6N2E2_4609 0.84 -0.2 5,334,324 - Pf6N2E2_4609 0.84 -1.5 5,334,324 - Pf6N2E2_4609 0.84 -0.9 5,334,324 - Pf6N2E2_4609 0.84 -0.8 5,334,324 - Pf6N2E2_4609 0.84 -1.0 5,334,324 - Pf6N2E2_4609 0.84 -0.6 5,334,324 - Pf6N2E2_4609 0.84 -0.3 5,334,393 - +0.5 5,334,393 - -1.4 5,334,393 - +1.1 5,334,422 - -1.8 5,334,600 - +1.2 5,334,615 - +0.3 5,334,615 - -1.6
Or see this region's nucleotide sequence