Strain Fitness in Pantoea sp. MT58 around IAI47_19285

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
83,432	+		IAI47_19280	0.29	+0.4
83,432	+		IAI47_19280	0.29	-2.7
83,432	+		IAI47_19280	0.29	+0.1
83,432	+		IAI47_19280	0.29	+0.9
83,432	+		IAI47_19280	0.29	-0.3
83,433	-		IAI47_19280	0.29	-0.8
83,433	-		IAI47_19280	0.29	+0.1
83,433	-		IAI47_19280	0.29	+0.8
83,433	-		IAI47_19280	0.29	+0.3
83,433	-		IAI47_19280	0.29	+3.5
83,433	-		IAI47_19280	0.29	-1.3
83,500	-		IAI47_19280	0.34	-1.7
83,500	-		IAI47_19280	0.34	+1.9
83,520	+		IAI47_19280	0.36	+0.1
83,520	+		IAI47_19280	0.36	+0.8
83,537	-		IAI47_19280	0.37	-1.5
83,540	+		IAI47_19280	0.38	+0.9
83,541	+		IAI47_19280	0.38	-1.8
83,541	+		IAI47_19280	0.38	+0.1
83,541	+		IAI47_19280	0.38	+1.1
83,541	+		IAI47_19280	0.38	+2.1
83,541	+		IAI47_19280	0.38	-1.6
83,541	+		IAI47_19280	0.38	+0.4
83,541	+		IAI47_19280	0.38	-1.2
83,542	-		IAI47_19280	0.38	+0.9
83,542	-		IAI47_19280	0.38	+1.2
83,542	-		IAI47_19280	0.38	+0.5
83,542	-		IAI47_19280	0.38	+1.3
83,542	-		IAI47_19280	0.38	+0.3
83,542	-		IAI47_19280	0.38	-0.4
83,542	-		IAI47_19280	0.38	-0.2
83,542	-		IAI47_19280	0.38	+1.5
83,542	-		IAI47_19280	0.38	+1.4
83,565	+		IAI47_19280	0.40	-1.8
83,566	-		IAI47_19280	0.40	+1.5
83,566	-		IAI47_19280	0.40	-0.2
83,566	-		IAI47_19280	0.40	+0.5
83,566	-		IAI47_19280	0.40	-0.5
83,581	-		IAI47_19280	0.41	+0.9
83,656	-		IAI47_19280	0.47	-0.1
83,753	+		IAI47_19280	0.54	+1.5
83,753	+		IAI47_19280	0.54	+0.8
83,753	+		IAI47_19280	0.54	-0.2
83,754	-		IAI47_19280	0.54	-1.2
83,754	-		IAI47_19280	0.54	-1.0
83,754	-		IAI47_19280	0.54	-0.1
83,754	-		IAI47_19280	0.54	+0.8
83,754	-		IAI47_19280	0.54	+1.9
83,754	-		IAI47_19280	0.54	-0.1
83,754	-		IAI47_19280	0.54	+0.3
83,754	-		IAI47_19280	0.54	+1.9
83,765	+		IAI47_19280	0.55	+0.4
83,765	+		IAI47_19280	0.55	+0.7
83,765	+		IAI47_19280	0.55	-0.5
83,765	+		IAI47_19280	0.55	-0.0
83,765	+		IAI47_19280	0.55	+0.3
83,765	+		IAI47_19280	0.55	+0.6
83,765	+		IAI47_19280	0.55	+0.2
83,765	+		IAI47_19280	0.55	-0.1
83,765	+		IAI47_19280	0.55	+0.8
83,766	-		IAI47_19280	0.55	+1.1
83,766	-		IAI47_19280	0.55	+0.6
83,766	-		IAI47_19280	0.55	-1.6
83,766	-		IAI47_19280	0.55	-0.2
83,766	-		IAI47_19280	0.55	+0.5
83,766	-		IAI47_19280	0.55	+0.4
83,766	-		IAI47_19280	0.55	-0.9
83,766	-		IAI47_19280	0.55	+1.1
83,766	-		IAI47_19280	0.55	-0.3
83,766	-		IAI47_19280	0.55	+0.1
83,767	+		IAI47_19280	0.55	-0.1
83,767	+		IAI47_19280	0.55	+0.9
83,767	+		IAI47_19280	0.55	+1.3
83,767	+		IAI47_19280	0.55	-1.2
83,768	-		IAI47_19280	0.55	+0.2
83,768	-		IAI47_19280	0.55	+0.2
83,768	-		IAI47_19280	0.55	-1.2
83,768	-		IAI47_19280	0.55	+1.7
83,768	-		IAI47_19280	0.55	+1.9
83,768	-		IAI47_19280	0.55	+1.6
83,768	-		IAI47_19280	0.55	+0.1
83,768	-		IAI47_19280	0.55	+0.8
83,768	-		IAI47_19280	0.55	+2.3
83,790	+		IAI47_19280	0.57	+1.0
83,851	+		IAI47_19280	0.62	+1.5
83,852	-		IAI47_19280	0.62	-0.3
83,852	-		IAI47_19280	0.62	-1.5
83,935	-		IAI47_19280	0.68	-0.2
83,935	-		IAI47_19280	0.68	+0.0
83,960	+		IAI47_19280	0.70	+1.1
83,960	+		IAI47_19280	0.70	+0.3
83,981	+		IAI47_19280	0.72	+0.1
83,981	+		IAI47_19280	0.72	+0.5
83,981	+		IAI47_19280	0.72	+0.6
84,002	-		IAI47_19280	0.74	-1.0
84,034	+		IAI47_19280	0.76	+1.2
84,034	+		IAI47_19280	0.76	+0.3
84,034	+		IAI47_19280	0.76	-1.0
84,035	-		IAI47_19280	0.76	+0.1
84,035	-		IAI47_19280	0.76	+0.6
84,035	-		IAI47_19280	0.76	+1.1
84,057	-		IAI47_19280	0.78	+1.8
84,066	+		IAI47_19280	0.78	+0.8
84,066	+		IAI47_19280	0.78	+2.3
84,120	+		IAI47_19280	0.83	+1.1
84,121	-		IAI47_19280	0.83	-0.8
84,165	-		IAI47_19280	0.86	+0.8
84,194	+		IAI47_19280	0.88	+1.5
84,194	+		IAI47_19280	0.88	+0.5
84,195	-		IAI47_19280	0.89	-2.2
84,195	-		IAI47_19280	0.89	+0.3
84,195	-		IAI47_19280	0.89	+0.2
84,195	-		IAI47_19280	0.89	+1.4
84,198	+		IAI47_19280	0.89	-0.5
84,198	+		IAI47_19280	0.89	+1.3
84,198	+		IAI47_19280	0.89	-0.3
84,198	+		IAI47_19280	0.89	+0.2
84,198	+		IAI47_19280	0.89	+0.8
84,198	+		IAI47_19280	0.89	+0.0
84,198	+		IAI47_19280	0.89	+1.8
84,198	+		IAI47_19280	0.89	-1.1
84,198	+		IAI47_19280	0.89	-0.2
84,198	+		IAI47_19280	0.89	-1.9
84,198	+		IAI47_19280	0.89	+0.1
84,198	+		IAI47_19280	0.89	+0.1
84,198	+		IAI47_19280	0.89	+1.3
84,198	+		IAI47_19280	0.89	-0.2
84,198	+		IAI47_19280	0.89	-0.7
84,199	-		IAI47_19280	0.89	+0.6
84,199	-		IAI47_19280	0.89	+1.3
84,199	-		IAI47_19280	0.89	-0.2
84,199	-		IAI47_19280	0.89	+0.9
84,199	-		IAI47_19280	0.89	-0.1
84,199	-		IAI47_19280	0.89	-2.4
84,199	-		IAI47_19280	0.89	+0.5
84,199	-		IAI47_19280	0.89	-0.3
84,340	+				+0.4
84,340	+				+1.8
84,406	+				+0.5
84,406	+				+1.1
84,407	-				+0.9
84,407	-				-0.1
84,407	-				+1.7
84,407	-				+0.6
84,407	-				-0.7
84,414	+				-1.2
84,425	-				+1.3
84,427	+				-0.9
84,427	+				+0.1
84,427	+				+1.6
84,428	-				-0.5
84,438	+				+0.7
84,469	+				-1.2
84,506	+		IAI47_19285	0.11	-0.2
84,514	+		IAI47_19285	0.12	+0.6
84,515	-		IAI47_19285	0.12	+1.2
84,515	-		IAI47_19285	0.12	-0.7
84,612	+		IAI47_19285	0.26	+0.6
84,612	+		IAI47_19285	0.26	-1.7
84,612	+		IAI47_19285	0.26	-0.4
84,612	+		IAI47_19285	0.26	-0.5
84,612	+		IAI47_19285	0.26	+1.2
84,612	+		IAI47_19285	0.26	+1.7
84,612	+		IAI47_19285	0.26	-0.2
84,612	+		IAI47_19285	0.26	-0.2
84,613	-		IAI47_19285	0.26	+0.3
84,613	-		IAI47_19285	0.26	+0.9
84,613	-		IAI47_19285	0.26	+0.6
84,613	-		IAI47_19285	0.26	-1.6
84,613	-		IAI47_19285	0.26	+0.7
84,613	-		IAI47_19285	0.26	+0.2
84,613	-		IAI47_19285	0.26	+0.3
84,649	+		IAI47_19285	0.31	+2.3
84,650	-		IAI47_19285	0.31	-0.6
84,671	-		IAI47_19285	0.34	-1.3
84,687	+		IAI47_19285	0.36	+1.3
84,687	+		IAI47_19285	0.36	+0.1
84,688	-		IAI47_19285	0.36	-0.6
84,688	-		IAI47_19285	0.36	-0.9
84,688	-		IAI47_19285	0.36	+0.1
84,688	-		IAI47_19285	0.36	+1.2
84,710	+		IAI47_19285	0.39	+0.2
84,710	+		IAI47_19285	0.39	+0.9
84,710	+		IAI47_19285	0.39	-0.8
84,711	-		IAI47_19285	0.39	-0.1
84,711	-		IAI47_19285	0.39	+1.6
84,711	-		IAI47_19285	0.39	+0.2
84,711	-		IAI47_19285	0.39	+0.1
84,711	-		IAI47_19285	0.39	-0.2
84,711	-		IAI47_19285	0.39	+3.0
84,711	-		IAI47_19285	0.39	-1.9
84,712	+		IAI47_19285	0.40	+0.3
84,713	-		IAI47_19285	0.40	+0.3
84,713	-		IAI47_19285	0.40	+0.5
84,713	-		IAI47_19285	0.40	+1.8
84,713	-		IAI47_19285	0.40	+0.7
84,713	-		IAI47_19285	0.40	-0.6
84,738	+		IAI47_19285	0.43	-0.7
84,741	+		IAI47_19285	0.44	-0.3
84,741	+		IAI47_19285	0.44	-0.7
84,742	-		IAI47_19285	0.44	-1.2
84,757	+		IAI47_19285	0.46	-1.2
84,785	+		IAI47_19285	0.50	-0.3
84,785	+		IAI47_19285	0.50	-0.2
84,785	+		IAI47_19285	0.50	-0.8
84,786	-		IAI47_19285	0.50	+0.6
84,786	-		IAI47_19285	0.50	-0.5
84,835	+		IAI47_19285	0.57	+1.3
84,835	+		IAI47_19285	0.57	-2.1
84,836	-		IAI47_19285	0.57	+1.5
84,845	+		IAI47_19285	0.58	+0.8
84,845	+		IAI47_19285	0.58	-1.0
84,845	+		IAI47_19285	0.58	+1.1
84,845	+		IAI47_19285	0.58	+0.2
84,845	+		IAI47_19285	0.58	-0.4
84,845	+		IAI47_19285	0.58	+3.3
84,845	+		IAI47_19285	0.58	-0.0
84,845	+		IAI47_19285	0.58	-2.1
84,845	+		IAI47_19285	0.58	-0.3
84,845	+		IAI47_19285	0.58	+1.6
84,845	+		IAI47_19285	0.58	-0.8
84,846	-		IAI47_19285	0.58	+0.9
84,846	-		IAI47_19285	0.58	-0.5
84,846	-		IAI47_19285	0.58	+1.1
84,846	-		IAI47_19285	0.58	+1.6
84,846	-		IAI47_19285	0.58	+0.8
84,846	-		IAI47_19285	0.58	+0.3
84,846	-		IAI47_19285	0.58	+1.2
84,846	-		IAI47_19285	0.58	-0.8
84,846	-		IAI47_19285	0.58	+1.6
84,846	-		IAI47_19285	0.58	-0.7
84,848	+		IAI47_19285	0.59	+0.3
84,848	+		IAI47_19285	0.59	-0.6
84,848	+		IAI47_19285	0.59	-0.6
84,848	+		IAI47_19285	0.59	-1.2
84,849	-		IAI47_19285	0.59	+2.6
84,849	-		IAI47_19285	0.59	+0.4
84,849	-		IAI47_19285	0.59	-1.9
84,973	+		IAI47_19285	0.76	+0.6
84,988	+		IAI47_19285	0.78	+0.6
84,989	-		IAI47_19285	0.78	+0.3
85,027	+		IAI47_19285	0.84	-0.4
85,028	-		IAI47_19285	0.84	+2.3
85,028	-		IAI47_19285	0.84	-1.0
85,065	+		IAI47_19285	0.89	-0.6
85,066	-		IAI47_19285	0.89	+0.1
85,066	-		IAI47_19285	0.89	+0.0
85,075	+				-1.9
85,075	+				-0.7
85,075	+				+0.5
85,075	+				+1.8
85,076	-				+0.5
85,076	-				-0.2
85,076	-				+0.3
85,076	-				+1.3
85,076	-				-0.2
85,076	-				+0.1
85,076	-				+0.9
85,079	+				+0.7
85,079	+				+1.1
85,079	+				+1.3
85,079	+				-0.2
85,079	+				+0.1
85,079	+				+0.1
85,079	+				+1.2
85,079	+				+0.0
85,079	+				+0.7
85,079	+				+1.9
85,079	+				+1.2
85,079	+				+0.3
85,080	-				+0.2
85,080	-				-1.4
85,080	-				-0.2
85,080	-				-0.0
85,080	-				+1.3
85,080	-				-1.0
85,080	-				+0.2
85,080	-				+1.3
85,080	-				+0.1
85,080	-				-0.1
85,080	-				-0.8
85,080	-				+0.5
85,080	-				-0.8
85,080	-				+0.1
85,080	-				+0.6
85,080	-				-0.2
85,080	-				-0.1
85,107	+				-0.7
85,107	+				+3.9
85,107	+				-0.2
85,137	+				-0.5
85,137	+				+0.3
85,174	-		IAI47_19290	0.11	-0.4
85,189	+		IAI47_19290	0.16	+0.4
85,189	+		IAI47_19290	0.16	+1.1
85,189	+		IAI47_19290	0.16	+0.1
85,190	-		IAI47_19290	0.16	-0.6
85,190	-		IAI47_19290	0.16	-0.1
85,190	-		IAI47_19290	0.16	+0.7
85,190	-		IAI47_19290	0.16	+1.1
85,190	-		IAI47_19290	0.16	-1.9
85,211	-		IAI47_19290	0.24	+2.3
85,211	-		IAI47_19290	0.24	-1.1
85,215	+		IAI47_19290	0.25	-0.1
85,215	+		IAI47_19290	0.25	-0.2
85,215	+		IAI47_19290	0.25	-0.5
85,215	+		IAI47_19290	0.25	+0.3
85,215	+		IAI47_19290	0.25	-1.1
85,215	+		IAI47_19290	0.25	-0.8
85,215	+		IAI47_19290	0.25	+1.8
85,216	-		IAI47_19290	0.25	+1.5
85,216	-		IAI47_19290	0.25	-0.9
85,216	-		IAI47_19290	0.25	-1.7
85,216	-		IAI47_19290	0.25	+0.3
85,218	-		IAI47_19290	0.26	+0.8
85,230	+		IAI47_19290	0.30	+0.2
85,293	+		IAI47_19290	0.51	-0.2
85,293	+		IAI47_19290	0.51	-0.2
85,293	+		IAI47_19290	0.51	-0.9
85,304	-		IAI47_19290	0.55	-0.2
85,392	+		IAI47_19290	0.85	-0.5
85,392	+		IAI47_19290	0.85	+1.9
85,393	-		IAI47_19290	0.85	+0.3
85,424	+				+0.5
85,424	+				-0.8
85,424	+				-0.2
85,424	+				-0.5
85,425	-				-1.5
85,425	-				-0.9
85,427	+				+0.2
85,427	+				+0.7
85,427	+				-0.2
85,427	+				-0.2
85,428	-				+1.2
85,428	-				-1.3
85,431	-				-0.1
85,485	+				+0.8
85,485	+				-0.9
85,485	+				+0.6
85,486	-				+1.3
85,486	-				+0.6
85,486	-				+0.3
85,490	+				+0.9
85,576	+		IAI47_19295	0.34	-0.3
85,577	-		IAI47_19295	0.35	+0.6
85,577	-		IAI47_19295	0.35	+0.1
85,589	+		IAI47_19295	0.42	-1.0
85,639	+		IAI47_19295	0.73	+1.2
85,639	+		IAI47_19295	0.73	+2.4
85,678	+				+0.7
85,680	+				+1.0
85,681	-				-0.5
85,687	-				+1.1
85,690	-				-0.3
85,696	+				-0.8
85,696	+				+2.9
85,696	+				-0.2
85,696	+				-0.1
85,696	+				+0.3
85,697	-				-0.3
85,710	+				-1.8
85,751	+		IAI47_19300	0.13	-0.5
85,751	+		IAI47_19300	0.13	+0.3
85,751	+		IAI47_19300	0.13	-0.4
85,751	+		IAI47_19300	0.13	-0.5
85,751	+		IAI47_19300	0.13	+0.6
85,752	-		IAI47_19300	0.13	-0.9
85,752	-		IAI47_19300	0.13	+0.2
85,752	-		IAI47_19300	0.13	-0.7
85,821	+		IAI47_19300	0.26	+0.5
85,821	+		IAI47_19300	0.26	-0.9
85,821	+		IAI47_19300	0.26	+0.2
85,821	+		IAI47_19300	0.26	-1.3
85,821	+		IAI47_19300	0.26	+2.7
85,822	-		IAI47_19300	0.26	+2.3
85,822	-		IAI47_19300	0.26	+0.9
85,822	-		IAI47_19300	0.26	-0.6
85,824	-		IAI47_19300	0.27	-0.7
85,845	-		IAI47_19300	0.31	+1.3
85,845	-		IAI47_19300	0.31	-0.1
85,845	-		IAI47_19300	0.31	-1.2
85,879	-		IAI47_19300	0.37	+0.7
85,935	+		IAI47_19300	0.48	+0.3
85,935	+		IAI47_19300	0.48	+1.6
85,935	+		IAI47_19300	0.48	+0.6
85,935	+		IAI47_19300	0.48	+1.9
85,935	+		IAI47_19300	0.48	-1.5
85,935	+		IAI47_19300	0.48	+1.0
85,935	+		IAI47_19300	0.48	+0.0
85,935	+		IAI47_19300	0.48	+0.5
85,935	+		IAI47_19300	0.48	+0.1
85,935	+		IAI47_19300	0.48	-1.4
85,936	-		IAI47_19300	0.48	+0.0
85,936	-		IAI47_19300	0.48	-0.3
85,936	-		IAI47_19300	0.48	+0.1
85,936	-		IAI47_19300	0.48	-1.1
85,936	-		IAI47_19300	0.48	+0.3
85,936	-		IAI47_19300	0.48	+0.8
85,936	-		IAI47_19300	0.48	-1.2
85,936	-		IAI47_19300	0.48	+0.4
85,936	-		IAI47_19300	0.48	+1.3
85,936	-		IAI47_19300	0.48	+0.9
85,937	+		IAI47_19300	0.48	+1.2
85,937	+		IAI47_19300	0.48	+1.1
85,937	+		IAI47_19300	0.48	+0.3
85,937	+		IAI47_19300	0.48	-0.8
85,937	+		IAI47_19300	0.48	+1.0
85,938	-		IAI47_19300	0.49	+0.2
85,938	-		IAI47_19300	0.49	-0.4
85,938	-		IAI47_19300	0.49	-1.8
85,938	-		IAI47_19300	0.49	-0.2
85,938	-		IAI47_19300	0.49	+1.6
85,938	-		IAI47_19300	0.49	+1.3
85,938	-		IAI47_19300	0.49	+0.3
85,938	-		IAI47_19300	0.49	-0.7
85,938	-		IAI47_19300	0.49	-0.1
85,938	-		IAI47_19300	0.49	-0.9
85,938	-		IAI47_19300	0.49	+0.4
85,938	-		IAI47_19300	0.49	-0.7
86,006	+		IAI47_19300	0.62	+1.0
86,006	+		IAI47_19300	0.62	+1.0
86,007	-		IAI47_19300	0.62	+0.8
86,007	-		IAI47_19300	0.62	-0.2
86,007	-		IAI47_19300	0.62	+0.4
86,033	+		IAI47_19300	0.67	+0.3
86,034	-		IAI47_19300	0.67	+0.1
86,084	+		IAI47_19300	0.77	+1.3
86,084	+		IAI47_19300	0.77	-0.2
86,084	+		IAI47_19300	0.77	-0.8
86,084	+		IAI47_19300	0.77	+1.0
86,085	-		IAI47_19300	0.77	+1.3
86,085	-		IAI47_19300	0.77	-0.3
86,090	+		IAI47_19300	0.78	-0.7
86,090	+		IAI47_19300	0.78	-0.3
86,091	-		IAI47_19300	0.78	+0.7
86,091	-		IAI47_19300	0.78	-2.2
86,091	-		IAI47_19300	0.78	+1.2
86,091	-		IAI47_19300	0.78	+4.0
86,113	-		IAI47_19300	0.82	+1.6
86,125	+		IAI47_19300	0.84	-0.2
86,133	+		IAI47_19300	0.86	-0.0
86,134	-		IAI47_19300	0.86	+0.7
86,134	-		IAI47_19300	0.86	-1.2
86,134	-		IAI47_19300	0.86	-0.5