Strain Fitness in Pantoea sp. MT58 around IAI47_17450

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,697,946	-		IAI47_17445	0.69	-1.1
3,698,164	+		IAI47_17445	0.78	-1.8
3,698,277	+		IAI47_17445	0.82	+1.6
3,698,277	+		IAI47_17445	0.82	+0.6
3,698,277	+		IAI47_17445	0.82	+1.8
3,698,277	+		IAI47_17445	0.82	-0.4
3,698,277	+		IAI47_17445	0.82	-0.6
3,698,278	-		IAI47_17445	0.82	-0.9
3,698,278	-		IAI47_17445	0.82	-0.8
3,698,382	-		IAI47_17445	0.86	-1.9
3,698,446	+		IAI47_17445	0.88	-0.5
3,698,446	+		IAI47_17445	0.88	+0.6
3,698,446	+		IAI47_17445	0.88	-2.1
3,698,446	+		IAI47_17445	0.88	-0.6
3,698,447	-		IAI47_17445	0.88	+2.1
3,698,447	-		IAI47_17445	0.88	-0.2
3,698,447	-		IAI47_17445	0.88	+0.6
3,698,447	-		IAI47_17445	0.88	-0.5
3,698,447	-		IAI47_17445	0.88	-0.6
3,698,447	-		IAI47_17445	0.88	+0.8
3,698,573	-				+1.5
3,698,573	-				+1.3
3,698,583	+				+0.5
3,698,583	+				-1.7
3,698,583	+				-0.2
3,698,715	+				+0.3
3,698,715	+				-0.2
3,698,715	+				-0.1
3,698,715	+				+0.9
3,698,715	+				-0.4
3,698,716	-				-0.6
3,698,716	-				+0.3
3,698,716	-				+1.2
3,698,716	-				+0.2
3,698,755	+				-0.6
3,698,812	-				+1.1
3,698,930	-				-2.4
3,698,983	+		IAI47_17450	0.11	+1.7
3,698,983	+		IAI47_17450	0.11	-0.4
3,698,983	+		IAI47_17450	0.11	+1.9
3,698,983	+		IAI47_17450	0.11	-1.6
3,698,984	-		IAI47_17450	0.11	-2.2
3,698,984	-		IAI47_17450	0.11	-1.7
3,699,043	+		IAI47_17450	0.23	+0.2
3,699,043	+		IAI47_17450	0.23	-0.4
3,699,044	-		IAI47_17450	0.24	+2.1
3,699,044	-		IAI47_17450	0.24	-0.9
3,699,044	-		IAI47_17450	0.24	-1.1
3,699,064	+		IAI47_17450	0.28	+1.8
3,699,064	+		IAI47_17450	0.28	-0.8
3,699,064	+		IAI47_17450	0.28	-0.7
3,699,064	+		IAI47_17450	0.28	+0.3
3,699,064	+		IAI47_17450	0.28	+0.0
3,699,064	+		IAI47_17450	0.28	+1.7
3,699,064	+		IAI47_17450	0.28	-0.1
3,699,065	-		IAI47_17450	0.28	+0.2
3,699,065	-		IAI47_17450	0.28	-0.9
3,699,118	+		IAI47_17450	0.39	-0.4
3,699,118	+		IAI47_17450	0.39	+0.5
3,699,119	-				+2.2
3,699,119	-		IAI47_17450	0.39	-1.1
3,699,119	-		IAI47_17450	0.39	-0.1
3,699,119	-		IAI47_17450	0.39	-2.2
3,699,151	+		IAI47_17450	0.45	-1.0
3,699,151	+		IAI47_17450	0.45	-2.5
3,699,202	+		IAI47_17450	0.56	-1.1
3,699,202	+		IAI47_17450	0.56	-0.9
3,699,202	+		IAI47_17450	0.56	-1.0
3,699,202	+		IAI47_17450	0.56	-1.2
3,699,202	+		IAI47_17450	0.56	+0.2
3,699,202	+		IAI47_17450	0.56	+0.1
3,699,203	-		IAI47_17450	0.56	-1.3
3,699,203	-		IAI47_17450	0.56	-1.1
3,699,203	-		IAI47_17450	0.56	-1.7
3,699,203	-		IAI47_17450	0.56	-0.1
3,699,208	+		IAI47_17450	0.57	+0.6
3,699,209	-		IAI47_17450	0.57	-0.2
3,699,236	+		IAI47_17450	0.63	+0.9
3,699,237	-		IAI47_17450	0.63	-1.9
3,699,301	+		IAI47_17450	0.76	-1.4
3,699,301	+		IAI47_17450	0.76	-1.3
3,699,301	+		IAI47_17450	0.76	-1.4
3,699,301	+		IAI47_17450	0.76	-1.3
3,699,301	+		IAI47_17450	0.76	-2.6
3,699,301	+		IAI47_17450	0.76	-0.2
3,699,302	-		IAI47_17450	0.76	-0.7
3,699,302	-		IAI47_17450	0.76	+1.0
3,699,302	-		IAI47_17450	0.76	+0.9
3,699,302	-		IAI47_17450	0.76	-1.6
3,699,302	-		IAI47_17450	0.76	-1.9
3,699,302	-		IAI47_17450	0.76	-0.8
3,699,302	-		IAI47_17450	0.76	+0.4
3,699,302	-		IAI47_17450	0.76	-1.2
3,699,302	-		IAI47_17450	0.76	-1.7
3,699,308	+		IAI47_17450	0.77	-0.8
3,699,308	+		IAI47_17450	0.77	-0.9
3,699,308	+		IAI47_17450	0.77	-2.2
3,699,309	-		IAI47_17450	0.77	-1.2
3,699,309	-		IAI47_17450	0.77	-2.4
3,699,368	+		IAI47_17450	0.89	-0.9
3,699,368	+		IAI47_17450	0.89	+2.6
3,699,369	-		IAI47_17450	0.90	-1.1
3,699,369	-		IAI47_17450	0.90	-0.9
3,699,369	-		IAI47_17450	0.90	-2.8
3,699,403	+				-0.7
3,699,403	+				+1.2
3,699,403	+				+0.5
3,699,404	-				-1.8
3,699,425	+				-0.5
3,699,425	+				-0.2
3,699,425	+				-1.2
3,699,425	+				-1.5
3,699,425	+				-2.5
3,699,425	+				-3.1
3,699,426	-				-1.9
3,699,426	-				-0.9
3,699,426	-				-3.1
3,699,426	-				-1.3
3,699,426	-				-0.5
3,699,445	+				+0.9
3,699,445	+				-1.3
3,699,445	+				-1.1
3,699,445	+				-0.5
3,699,445	+				-0.7
3,699,445	+				-1.3
3,699,445	+				+0.3
3,699,445	+				-0.4
3,699,445	+				-0.8
3,699,445	+				+0.1
3,699,446	-				-3.3
3,699,446	-				+0.1
3,699,446	-				-2.6
3,699,446	-				-3.4
3,699,446	-				-3.0
3,699,446	-				-0.9
3,699,485	-				-1.2
3,699,587	+				-0.4
3,699,709	-		IAI47_17455	0.17	-2.6
3,699,709	-		IAI47_17455	0.17	-3.5
3,699,748	-		IAI47_17455	0.19	-1.5
3,699,825	+		IAI47_17455	0.23	-0.4
3,699,825	+		IAI47_17455	0.23	-1.0
3,699,825	+		IAI47_17455	0.23	-2.3
3,699,825	+		IAI47_17455	0.23	+0.4
3,699,825	+		IAI47_17455	0.23	-3.1
3,699,825	+		IAI47_17455	0.23	-0.9
3,699,826	-		IAI47_17455	0.23	-1.3
3,699,826	-		IAI47_17455	0.23	-0.5
3,699,899	+		IAI47_17455	0.28	-0.4
3,699,899	+		IAI47_17455	0.28	-0.3
3,699,900	-		IAI47_17455	0.28	-3.1
3,699,900	-		IAI47_17455	0.28	-2.8
3,699,900	-		IAI47_17455	0.28	+0.2
3,699,947	+		IAI47_17455	0.31	-0.8
3,699,948	-		IAI47_17455	0.31	-1.6
3,700,065	+		IAI47_17455	0.37	+1.0
3,700,066	-		IAI47_17455	0.37	-0.2
3,700,073	+		IAI47_17455	0.38	-2.7
3,700,073	+		IAI47_17455	0.38	-2.2
3,700,074	-		IAI47_17455	0.38	-0.2
3,700,074	-		IAI47_17455	0.38	-0.7
3,700,074	-		IAI47_17455	0.38	-1.4
3,700,131	+		IAI47_17455	0.41	-0.0
3,700,132	-		IAI47_17455	0.41	-0.5
3,700,132	-		IAI47_17455	0.41	-0.4
3,700,132	-		IAI47_17455	0.41	-1.8
3,700,164	+		IAI47_17455	0.43	+0.7
3,700,164	+		IAI47_17455	0.43	+0.2
3,700,260	+		IAI47_17455	0.49	-0.8
3,700,260	+		IAI47_17455	0.49	-2.7
3,700,260	+		IAI47_17455	0.49	-0.4
3,700,378	+		IAI47_17455	0.56	-1.1
3,700,378	+		IAI47_17455	0.56	-2.4