Strain Fitness in Pantoea sp. MT58 around IAI47_13220

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,795,074	+		IAI47_13215	0.19	+0.2
2,795,075	-		IAI47_13215	0.19	-0.5
2,795,152	-		IAI47_13215	0.28	+0.9
2,795,182	+		IAI47_13215	0.31	-1.5
2,795,183	-		IAI47_13215	0.31	+1.2
2,795,183	-		IAI47_13215	0.31	+0.4
2,795,272	+		IAI47_13215	0.40	-0.9
2,795,272	+		IAI47_13215	0.40	+0.7
2,795,273	-		IAI47_13215	0.41	+1.6
2,795,273	-		IAI47_13215	0.41	+1.7
2,795,273	-		IAI47_13215	0.41	-0.3
2,795,273	-		IAI47_13215	0.41	+1.1
2,795,273	-		IAI47_13215	0.41	-0.6
2,795,273	-		IAI47_13215	0.41	+2.1
2,795,273	-		IAI47_13215	0.41	-1.8
2,795,472	+		IAI47_13215	0.62	-0.6
2,795,472	+		IAI47_13215	0.62	+0.6
2,795,472	+		IAI47_13215	0.62	+0.5
2,795,472	+		IAI47_13215	0.62	+0.7
2,795,473	-		IAI47_13215	0.62	+0.5
2,795,473	-		IAI47_13215	0.62	-0.3
2,795,473	-		IAI47_13215	0.62	+1.1
2,795,473	-		IAI47_13215	0.62	+0.6
2,795,473	-		IAI47_13215	0.62	-0.5
2,795,473	-		IAI47_13215	0.62	+2.7
2,795,521	+		IAI47_13215	0.67	-0.8
2,795,559	+		IAI47_13215	0.71	+0.2
2,795,559	+		IAI47_13215	0.71	-0.6
2,795,559	+		IAI47_13215	0.71	-2.2
2,795,560	-		IAI47_13215	0.71	+0.9
2,795,560	-		IAI47_13215	0.71	+1.7
2,795,560	-		IAI47_13215	0.71	+1.2
2,795,560	-		IAI47_13215	0.71	+2.5
2,795,560	-		IAI47_13215	0.71	-0.4
2,795,568	+		IAI47_13215	0.72	-0.3
2,795,568	+		IAI47_13215	0.72	-1.8
2,795,568	+		IAI47_13215	0.72	+0.5
2,795,631	+		IAI47_13215	0.79	-2.5
2,795,631	+		IAI47_13215	0.79	+2.6
2,795,632	-		IAI47_13215	0.79	+1.6
2,795,632	-		IAI47_13215	0.79	+0.9
2,795,706	+		IAI47_13215	0.87	-1.0
2,795,706	+		IAI47_13215	0.87	-0.4
2,795,714	-		IAI47_13215	0.88	+0.5
2,795,725	+		IAI47_13215	0.89	-0.5
2,795,725	+		IAI47_13215	0.89	+1.0
2,795,726	-		IAI47_13215	0.89	-0.3
2,795,726	-		IAI47_13215	0.89	+2.2
2,795,770	-				+0.3
2,795,827	+				-2.2
2,795,841	+				+1.3
2,795,841	+				+1.2
2,795,841	+				-0.1
2,795,841	+				-1.3
2,795,842	-				+0.3
2,795,842	-				+2.3
2,795,855	+				-0.7
2,795,855	+				-0.5
2,795,860	+				-1.6
2,795,860	+				-0.1
2,795,860	+				-1.0
2,795,860	+				-2.0
2,795,860	+				+0.2
2,795,860	+				-1.1
2,795,861	-				+0.2
2,795,861	-				+1.2
2,795,861	-				-0.6
2,795,861	-				-0.7
2,795,867	+				+1.7
2,795,937	+				-0.9
2,795,943	-				+0.7
2,795,943	-				+0.9
2,795,943	-				-1.6
2,795,946	+				+3.2
2,795,946	+				-0.4
2,795,946	+				-0.8
2,795,946	+				-0.1
2,795,947	-				+0.4
2,795,947	-				+1.2
2,795,947	-				+1.7
2,795,968	+				+0.0
2,795,968	+				+1.3
2,795,968	+				+0.1
2,795,968	+				+0.9
2,795,968	+				-0.6
2,795,968	+				-0.5
2,795,968	+				+0.1
2,795,969	-				+0.3
2,795,969	-				-0.7
2,795,990	+				+0.5
2,795,990	+				-0.8
2,795,990	+				+1.5
2,795,990	+				-1.3
2,795,990	+				+1.0
2,795,991	-				+0.3
2,795,991	-				+0.4
2,795,991	-				+1.3
2,795,991	-				+2.2
2,796,067	+		IAI47_13220	0.15	-1.1
2,796,067	+		IAI47_13220	0.15	-0.3
2,796,067	+		IAI47_13220	0.15	+0.5
2,796,067	+		IAI47_13220	0.15	-0.3
2,796,067	+		IAI47_13220	0.15	-1.0
2,796,107	+		IAI47_13220	0.22	+0.4
2,796,107	+		IAI47_13220	0.22	+1.2
2,796,107	+		IAI47_13220	0.22	-0.7
2,796,108	-		IAI47_13220	0.22	-0.6
2,796,108	-		IAI47_13220	0.22	-0.7
2,796,118	+		IAI47_13220	0.24	-1.1
2,796,118	+		IAI47_13220	0.24	-2.6
2,796,119	-		IAI47_13220	0.24	-0.5
2,796,119	-		IAI47_13220	0.24	+0.1
2,796,119	-		IAI47_13220	0.24	+1.2
2,796,119	-		IAI47_13220	0.24	+0.3
2,796,131	+		IAI47_13220	0.26	+2.5
2,796,131	+		IAI47_13220	0.26	+1.0
2,796,131	+		IAI47_13220	0.26	+0.4
2,796,131	+		IAI47_13220	0.26	+1.2
2,796,132	-		IAI47_13220	0.26	+0.3
2,796,132	-		IAI47_13220	0.26	+0.4
2,796,132	-		IAI47_13220	0.26	-0.4
2,796,132	-		IAI47_13220	0.26	+0.0
2,796,132	-		IAI47_13220	0.26	+0.4
2,796,132	-		IAI47_13220	0.26	-0.4
2,796,145	+		IAI47_13220	0.28	-0.2
2,796,297	+		IAI47_13220	0.52	-0.6
2,796,489	-		IAI47_13220	0.82	-1.3
2,796,489	-		IAI47_13220	0.82	+0.5
2,796,514	-		IAI47_13220	0.86	-0.4
2,796,514	-		IAI47_13220	0.86	+1.5
2,796,539	+				-1.6
2,796,540	-				+1.0
2,796,540	-				+0.5
2,796,540	-				-0.8
2,796,542	+				+0.7
2,796,573	-				+0.7
2,796,574	-				-0.4
2,796,599	+				-1.3
2,796,599	+				+1.5
2,796,599	+				+1.6
2,796,600	-				-1.8
2,796,600	-				-0.8
2,796,600	-				+1.2
2,796,638	+				+0.3
2,796,639	-				+0.0
2,796,789	+		IAI47_13225	0.12	-1.8
2,796,790	-		IAI47_13225	0.12	-0.4
2,796,790	-		IAI47_13225	0.12	-0.4
2,796,879	-		IAI47_13225	0.18	+0.6
2,796,879	-		IAI47_13225	0.18	+0.3
2,796,879	-		IAI47_13225	0.18	+0.4
2,796,879	-		IAI47_13225	0.18	+2.2
2,796,894	+		IAI47_13225	0.19	-0.4
2,796,894	+		IAI47_13225	0.19	-3.2
2,796,894	+		IAI47_13225	0.19	-0.8
2,796,894	+		IAI47_13225	0.19	-1.2
2,796,894	+		IAI47_13225	0.19	+2.2
2,796,894	+		IAI47_13225	0.19	-2.5
2,796,894	+		IAI47_13225	0.19	+1.4
2,796,894	+		IAI47_13225	0.19	-1.2
2,796,894	+		IAI47_13225	0.19	+0.7
2,796,894	+		IAI47_13225	0.19	-0.1
2,796,894	+		IAI47_13225	0.19	+0.4
2,796,894	+		IAI47_13225	0.19	+0.5
2,796,895	-		IAI47_13225	0.19	+0.4
2,796,895	-		IAI47_13225	0.19	+1.7
2,796,895	-		IAI47_13225	0.19	+0.9
2,796,895	-		IAI47_13225	0.19	+0.9
2,796,895	-		IAI47_13225	0.19	+0.7
2,796,895	-		IAI47_13225	0.19	-1.1
2,796,895	-		IAI47_13225	0.19	-1.0
2,796,895	-		IAI47_13225	0.19	+1.2
2,796,895	-		IAI47_13225	0.19	+0.4
2,796,905	+		IAI47_13225	0.20	-1.4
2,797,034	+		IAI47_13225	0.28	+1.2
2,797,063	+		IAI47_13225	0.30	-1.9
2,797,064	-		IAI47_13225	0.30	+0.6
2,797,064	-		IAI47_13225	0.30	+0.1
2,797,367	+		IAI47_13225	0.51	-0.7
2,797,367	+		IAI47_13225	0.51	+0.3
2,797,367	+		IAI47_13225	0.51	-0.9
2,797,367	+		IAI47_13225	0.51	-0.8
2,797,367	+		IAI47_13225	0.51	-0.6
2,797,368	-		IAI47_13225	0.51	+1.3
2,797,368	-		IAI47_13225	0.51	-0.2
2,797,368	-		IAI47_13225	0.51	-1.0
2,797,574	+		IAI47_13225	0.64	-0.4