Strain Fitness in Pantoea sp. MT58 around IAI47_08840

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,867,531	+		IAI47_08835	0.46	+1.4
1,867,531	+		IAI47_08835	0.46	+0.6
1,867,532	-		IAI47_08835	0.46	+0.5
1,867,547	+		IAI47_08835	0.47	+1.0
1,867,548	-		IAI47_08835	0.47	-0.4
1,867,548	-		IAI47_08835	0.47	-0.2
1,867,614	+		IAI47_08835	0.51	+0.5
1,867,614	+		IAI47_08835	0.51	+0.5
1,867,615	-		IAI47_08835	0.51	-1.7
1,867,642	-		IAI47_08835	0.53	+0.3
1,867,714	-		IAI47_08835	0.57	-0.7
1,867,796	+		IAI47_08835	0.62	+1.0
1,867,807	+		IAI47_08835	0.63	+1.2
1,867,807	+		IAI47_08835	0.63	+0.5
1,867,807	+		IAI47_08835	0.63	+1.0
1,867,822	+		IAI47_08835	0.64	+2.0
1,867,864	+		IAI47_08835	0.66	+1.2
1,867,865	-		IAI47_08835	0.66	+1.2
1,867,865	-		IAI47_08835	0.66	-1.5
1,867,882	-		IAI47_08835	0.67	+1.2
1,868,006	-		IAI47_08835	0.75	+0.6
1,868,067	+		IAI47_08835	0.78	+0.3
1,868,067	+		IAI47_08835	0.78	-0.9
1,868,068	-		IAI47_08835	0.78	+1.7
1,868,073	+		IAI47_08835	0.79	+0.8
1,868,074	-		IAI47_08835	0.79	+0.3
1,868,121	+		IAI47_08835	0.82	+0.6
1,868,121	+		IAI47_08835	0.82	-0.1
1,868,142	+		IAI47_08835	0.83	+1.6
1,868,142	+		IAI47_08835	0.83	+0.2
1,868,142	+		IAI47_08835	0.83	+0.8
1,868,142	+		IAI47_08835	0.83	+0.4
1,868,143	-		IAI47_08835	0.83	-0.2
1,868,143	-		IAI47_08835	0.83	+1.0
1,868,143	-		IAI47_08835	0.83	+0.7
1,868,144	-		IAI47_08835	0.83	+2.1
1,868,149	+		IAI47_08835	0.83	+2.0
1,868,149	+		IAI47_08835	0.83	+2.0
1,868,150	-		IAI47_08835	0.83	+1.6
1,868,187	+		IAI47_08835	0.85	+0.5
1,868,188	-		IAI47_08835	0.86	+0.4
1,868,188	-		IAI47_08835	0.86	-0.2
1,868,188	-		IAI47_08835	0.86	+0.4
1,868,244	-		IAI47_08835	0.89	+0.6
1,868,244	-		IAI47_08835	0.89	+0.9
1,868,253	+		IAI47_08835	0.89	+0.4
1,868,280	+				+2.3
1,868,281	-				+1.5
1,868,281	-				-1.1
1,868,323	+				-0.2
1,868,324	-				-0.9
1,868,324	-				-1.0
1,868,476	-				-0.1
1,868,507	+				-0.4
1,868,507	+				+0.0
1,868,507	+				-0.4
1,868,508	-				+0.4
1,868,508	-				+0.1
1,868,508	-				-0.4
1,868,508	-				-1.0
1,868,508	-				-0.4
1,868,534	+				-0.3
1,868,534	+				-1.5
1,868,534	+				+0.6
1,868,535	-				-0.0
1,868,535	-				-1.1
1,868,535	-				-1.6
1,868,535	-				-1.9
1,868,535	-				-0.4
1,868,535	-				-0.8
1,868,535	-				-0.6
1,868,542	+				+0.8
1,868,632	+				-0.3
1,868,632	+				+2.0
1,868,632	+				+1.0
1,868,632	+				-0.6
1,868,633	-				+0.5
1,868,636	+				-0.5
1,868,636	+				+1.0
1,868,636	+				-0.7
1,868,636	+				+1.0
1,868,636	+				-1.0
1,868,636	+				-0.0
1,868,636	+				-0.0
1,868,636	+				-0.8
1,868,636	+				+0.1
1,868,636	+				-0.3
1,868,636	+				+2.0
1,868,636	+				-1.6
1,868,636	+				-1.6
1,868,637	-				+0.4
1,868,637	-				-0.2
1,868,637	-				+0.7
1,868,637	-				-0.9
1,868,637	-				-2.0
1,868,637	-				-1.5
1,868,637	-				-1.4
1,868,637	-				+1.0
1,868,637	-				-0.4
1,868,637	-				-0.2
1,868,637	-				+1.1
1,868,637	-				-0.5
1,868,639	+				-1.3
1,868,640	-				-0.1
1,868,640	-				-1.3
1,868,640	-				-1.6
1,868,640	-				-0.3
1,868,704	+		IAI47_08840	0.16	+0.6
1,868,705	-		IAI47_08840	0.16	-0.7
1,868,705	-		IAI47_08840	0.16	+0.1
1,868,725	+		IAI47_08840	0.18	-1.2
1,868,726	-		IAI47_08840	0.18	-1.3
1,868,726	-		IAI47_08840	0.18	-1.6
1,868,726	-		IAI47_08840	0.18	+1.2
1,868,726	-		IAI47_08840	0.18	+1.0
1,868,726	-		IAI47_08840	0.18	-0.4
1,868,833	+		IAI47_08840	0.27	-0.3
1,868,834	-		IAI47_08840	0.27	-0.0
1,868,834	-		IAI47_08840	0.27	+0.6
1,868,978	+		IAI47_08840	0.40	+1.0
1,868,999	+		IAI47_08840	0.42	-0.0
1,868,999	+		IAI47_08840	0.42	+0.4
1,869,000	-		IAI47_08840	0.42	-0.0
1,869,000	-		IAI47_08840	0.42	-0.4
1,869,232	+		IAI47_08840	0.63	-0.5
1,869,277	+		IAI47_08840	0.67	+0.1
1,869,278	-		IAI47_08840	0.67	-1.9
1,869,278	-		IAI47_08840	0.67	-0.3
1,869,278	-		IAI47_08840	0.67	-0.2
1,869,435	-		IAI47_08840	0.81	-1.5
1,869,435	-		IAI47_08840	0.81	-0.6
1,869,435	-		IAI47_08840	0.81	-1.0
1,869,448	+		IAI47_08840	0.82	+0.2
1,869,507	+		IAI47_08840	0.87	-2.6
1,869,507	+		IAI47_08840	0.87	-1.4
1,869,507	+		IAI47_08840	0.87	-0.5
1,869,529	+		IAI47_08840	0.89	-2.3
1,869,529	+		IAI47_08840	0.89	-2.3
1,869,537	+				-2.0
1,869,537	+				+1.1
1,869,538	-				+0.0
1,869,538	-				-0.2
1,869,540	+				+0.3
1,869,541	-				-1.0
1,869,559	+				+0.5
1,869,559	+				-0.2
1,869,559	+				-0.0
1,869,560	-				-0.2
1,869,575	-				+0.5
1,869,585	+				-0.4
1,869,647	+				+1.0
1,869,709	-				-0.1
1,869,709	-				+1.0
1,869,737	-		IAI47_08845	0.13	-0.6
1,869,737	-		IAI47_08845	0.13	-0.6
1,869,737	-		IAI47_08845	0.13	-2.5
1,870,040	-				-0.0
1,870,040	-				-0.4
1,870,040	-				-0.6
1,870,136	-		IAI47_08850	0.20	+2.4
1,870,136	-		IAI47_08850	0.20	-0.5
1,870,136	-		IAI47_08850	0.20	+1.0
1,870,136	-		IAI47_08850	0.20	+1.0
1,870,136	-		IAI47_08850	0.20	-0.6
1,870,136	-		IAI47_08850	0.20	-0.2
1,870,240	-		IAI47_08850	0.32	-0.7
1,870,241	+		IAI47_08850	0.33	-1.5
1,870,242	-		IAI47_08850	0.33	-2.0
1,870,324	-		IAI47_08850	0.43	-0.9
1,870,324	-		IAI47_08850	0.43	-0.4
1,870,363	-		IAI47_08850	0.48	-0.4
1,870,363	-		IAI47_08850	0.48	-1.0
1,870,363	-		IAI47_08850	0.48	+0.8
1,870,369	-		IAI47_08850	0.48	-0.6
1,870,369	-		IAI47_08850	0.48	+0.6
1,870,389	-		IAI47_08850	0.51	-0.7
1,870,389	-		IAI47_08850	0.51	+0.4
1,870,509	+		IAI47_08850	0.66	+0.6
1,870,510	-		IAI47_08850	0.66	-1.9
1,870,510	-		IAI47_08850	0.66	-0.0
1,870,538	+		IAI47_08850	0.69	-1.9
1,870,539	-		IAI47_08850	0.69	+0.3
1,870,539	-		IAI47_08850	0.69	-1.3