Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00770

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00765 and HSERO_RS00770 are separated by 287 nucleotidesHSERO_RS00770 and HSERO_RS00775 are separated by 120 nucleotides HSERO_RS00765: HSERO_RS00765 - cytochrome C, at 160,111 to 160,773 _RS00765 HSERO_RS00770: HSERO_RS00770 - cytochrome C biogenesis protein ResB, at 161,061 to 163,211 _RS00770 HSERO_RS00775: HSERO_RS00775 - cytochrome C biogenesis protein, at 163,332 to 164,486 _RS00775 Position (kb) 161 162 163 164Strain fitness (log2 ratio) -2 -1 0 1at 160.096 kb on + strandat 160.096 kb on + strandat 160.096 kb on + strandat 160.104 kb on - strandat 160.134 kb on + strandat 160.187 kb on - strand, within HSERO_RS00765at 160.344 kb on - strand, within HSERO_RS00765at 160.347 kb on + strand, within HSERO_RS00765at 160.416 kb on + strand, within HSERO_RS00765at 160.799 kb on - strandat 160.809 kb on - strandat 160.809 kb on - strandat 163.199 kb on + strandat 163.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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160,096 + -0.5
160,096 + -0.1
160,096 + -2.1
160,104 - -1.0
160,134 + -0.3
160,187 - HSERO_RS00765 0.11 -2.2
160,344 - HSERO_RS00765 0.35 -1.0
160,347 + HSERO_RS00765 0.36 -1.7
160,416 + HSERO_RS00765 0.46 -1.8
160,799 - +0.1
160,809 - -0.3
160,809 - +0.3
163,199 + -0.5
163,406 + -0.4

Or see this region's nucleotide sequence