Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02235

Experiment: PYE_noCalcium 4C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 4C survival rep3 28 days
2,382,642	-		CCNA_02233	0.38	-1.7
2,382,659	+		CCNA_02233	0.40	-1.1
2,382,659	+		CCNA_02233	0.40	+0.0
2,382,664	+		CCNA_02233	0.41	+2.0
2,382,667	-		CCNA_02233	0.41	-2.2
2,382,667	-		CCNA_02233	0.41	-0.3
2,382,669	+		CCNA_02233	0.42	-2.4
2,382,677	-		CCNA_02233	0.43	+0.6
2,382,738	-		CCNA_02233	0.51	-2.4
2,382,754	+		CCNA_02233	0.53	-3.6
2,382,762	-		CCNA_02233	0.54	-0.5
2,382,765	+		CCNA_02233	0.54	-1.1
2,382,769	+		CCNA_02233	0.55	+1.0
2,382,778	-		CCNA_02233	0.56	+0.8
2,382,788	-		CCNA_02233	0.57	-1.6
2,382,805	+		CCNA_02233	0.59	-2.3
2,382,805	-		CCNA_02233	0.59	-2.4
2,382,826	-		CCNA_02233	0.62	+0.4
2,382,831	-		CCNA_02233	0.63	-1.2
2,382,837	-		CCNA_02233	0.64	-0.9
2,382,841	+		CCNA_02233	0.64	-1.1
2,382,891	+		CCNA_02233	0.71	+0.6
2,382,891	+		CCNA_02233	0.71	-2.0
2,382,896	+		CCNA_02233	0.71	-2.0
2,382,899	-		CCNA_02233	0.72	-0.3
2,382,899	-		CCNA_02233	0.72	-0.5
2,382,899	-		CCNA_02233	0.72	-0.5
2,382,899	-		CCNA_02233	0.72	-1.5
2,382,910	+		CCNA_02233	0.73	+1.0
2,382,972	+		CCNA_02233	0.81	+0.7
2,383,056	+				+2.0
2,383,064	-				+0.0
2,383,070	-				-0.8
2,383,070	-				+0.4
2,383,071	-				+0.7
2,383,110	-				-3.3
2,383,111	+				+0.5
2,383,139	+				-2.8
2,383,144	+				-0.5
2,383,147	-				-0.2
2,383,147	-				+1.0
2,383,166	-		CCNA_02234	0.13	-0.8
2,383,169	+		CCNA_02234	0.14	+0.6
2,383,177	-		CCNA_02234	0.16	+0.5
2,383,196	+		CCNA_02234	0.22	-0.4
2,383,204	+		CCNA_02234	0.24	-0.3
2,383,221	-		CCNA_02234	0.29	-1.8
2,383,273	-		CCNA_02234	0.45	-0.4
2,383,288	-		CCNA_02234	0.49	+1.7
2,383,288	-		CCNA_02234	0.49	+3.0
2,383,312	+		CCNA_02234	0.57	-0.5
2,383,316	+		CCNA_02234	0.58	-1.4
2,383,398	-		CCNA_02234	0.82	-0.4
2,383,398	-		CCNA_02234	0.82	-1.3
2,383,430	-				-1.7
2,383,430	-				-1.4
2,383,431	-				-1.0
2,383,431	-				-2.8
2,383,445	+				-0.3
2,383,452	+				+0.0
2,383,484	+				+0.1
2,383,484	+				+0.8
2,383,484	+				-0.3
2,383,484	+				-3.3
2,383,490	+				+1.0
2,383,492	-				-2.6
2,383,492	-				-1.0
2,383,492	-				-2.4
2,383,562	+				+2.0
2,383,580	-				+1.2
2,383,580	-				+2.0
2,383,587	+				-2.0
2,383,619	+				-0.3
2,383,633	-				-0.1
2,383,668	+				-0.5
2,383,672	-				+0.5
2,383,698	+				+1.8
2,383,867	+		CCNA_02235	0.17	+0.8
2,383,867	-		CCNA_02235	0.17	-1.3
2,383,880	-		CCNA_02235	0.18	-1.0
2,383,897	+		CCNA_02235	0.19	-2.0
2,383,902	+		CCNA_02235	0.19	-1.0
2,383,905	-		CCNA_02235	0.19	+1.3
2,383,905	-		CCNA_02235	0.19	+0.5
2,383,910	-		CCNA_02235	0.20	-0.8
2,384,001	+		CCNA_02235	0.26	+0.7
2,384,001	+		CCNA_02235	0.26	-2.0
2,384,009	-		CCNA_02235	0.27	-1.0
2,384,061	-		CCNA_02235	0.31	-2.6
2,384,092	+		CCNA_02235	0.33	+0.5
2,384,092	+		CCNA_02235	0.33	+2.0
2,384,142	+		CCNA_02235	0.37	+0.0
2,384,142	+		CCNA_02235	0.37	-0.3
2,384,147	+		CCNA_02235	0.37	+0.5
2,384,155	-		CCNA_02235	0.38	+1.0
2,384,155	-		CCNA_02235	0.38	+0.9
2,384,155	-		CCNA_02235	0.38	-3.0
2,384,160	-		CCNA_02235	0.38	-1.3
2,384,163	+		CCNA_02235	0.38	-0.1
2,384,178	-		CCNA_02235	0.40	+0.2
2,384,190	+		CCNA_02235	0.40	-2.6
2,384,197	+		CCNA_02235	0.41	-1.0
2,384,197	+		CCNA_02235	0.41	-1.0
2,384,202	+		CCNA_02235	0.41	-1.0
2,384,205	-		CCNA_02235	0.42	+0.5
2,384,205	-		CCNA_02235	0.42	+0.6
2,384,210	-		CCNA_02235	0.42	-0.8
2,384,211	-		CCNA_02235	0.42	+3.6
2,384,301	-		CCNA_02235	0.49	-0.8
2,384,390	+		CCNA_02235	0.55	+0.5
2,384,410	+		CCNA_02235	0.57	-1.1
2,384,410	-		CCNA_02235	0.57	+0.6
2,384,415	+		CCNA_02235	0.57	-1.1
2,384,418	-		CCNA_02235	0.57	-0.3
2,384,423	-		CCNA_02235	0.58	+4.4
2,384,428	-		CCNA_02235	0.58	-3.5
2,384,428	-		CCNA_02235	0.58	+2.3
2,384,430	+		CCNA_02235	0.58	+2.0
2,384,438	-		CCNA_02235	0.59	-1.3
2,384,446	-		CCNA_02235	0.59	-2.5
2,384,457	+		CCNA_02235	0.60	-0.3
2,384,457	+		CCNA_02235	0.60	-1.1
2,384,464	+		CCNA_02235	0.61	+1.0
2,384,477	-		CCNA_02235	0.62	-0.8
2,384,487	-		CCNA_02235	0.62	-2.2
2,384,487	-		CCNA_02235	0.62	-0.3
2,384,487	-		CCNA_02235	0.62	-2.3
2,384,522	+		CCNA_02235	0.65	-1.5
2,384,536	+		CCNA_02235	0.66	+2.0
2,384,560	+		CCNA_02235	0.68	-2.0
2,384,579	-		CCNA_02235	0.69	-1.3
2,384,602	-		CCNA_02235	0.71	+0.3
2,384,628	-		CCNA_02235	0.73	-1.6
2,384,646	-		CCNA_02235	0.74	-1.1
2,384,668	+		CCNA_02235	0.76	-1.4
2,384,668	+		CCNA_02235	0.76	-0.0
2,384,674	+		CCNA_02235	0.76	-1.5
2,384,676	-		CCNA_02235	0.76	-2.5
2,384,682	-		CCNA_02235	0.77	-2.0
2,384,682	-		CCNA_02235	0.77	-0.9
2,384,682	-		CCNA_02235	0.77	-1.7
2,384,724	+		CCNA_02235	0.80	-2.4
2,384,732	-		CCNA_02235	0.80	-2.4
2,384,732	-		CCNA_02235	0.80	-0.3
2,384,751	+		CCNA_02235	0.82	-2.5
2,384,767	+		CCNA_02235	0.83	+0.0
2,384,775	-		CCNA_02235	0.84	-1.4
2,384,775	-		CCNA_02235	0.84	-0.5
2,384,775	-		CCNA_02235	0.84	-1.7
2,384,793	-		CCNA_02235	0.85	-0.5
2,384,798	-		CCNA_02235	0.85	+0.2
2,384,891	+				-1.9
2,384,891	-				+0.5
2,384,916	-				-1.1
2,384,960	-				-4.1
2,384,986	-				-0.3
2,385,012	+				-1.7
2,385,012	+				-1.1
2,385,020	-				+0.4
2,385,020	-				+1.6
2,385,030	-				-2.2
2,385,037	-				-0.5
2,385,039	+				-2.6
2,385,042	-				-2.8
2,385,060	+				-1.6
2,385,161	-		CCNA_02236	0.18	+0.0
2,385,161	-		CCNA_02236	0.18	+0.5
2,385,195	+		CCNA_02236	0.21	-2.4
2,385,205	+		CCNA_02236	0.23	-0.8
2,385,213	-		CCNA_02236	0.23	+2.0
2,385,213	-		CCNA_02236	0.23	+1.1
2,385,273	+		CCNA_02236	0.30	+1.6
2,385,285	-		CCNA_02236	0.31	-2.0
2,385,285	-		CCNA_02236	0.31	-1.8
2,385,292	+		CCNA_02236	0.32	-2.0
2,385,292	+		CCNA_02236	0.32	-2.2
2,385,298	+		CCNA_02236	0.33	+1.5
2,385,306	-		CCNA_02236	0.34	+0.0
2,385,316	-		CCNA_02236	0.35	-1.3
2,385,350	+		CCNA_02236	0.39	-0.3
2,385,372	-		CCNA_02236	0.41	-1.7
2,385,374	-		CCNA_02236	0.41	+1.5
2,385,382	-		CCNA_02236	0.42	+1.8
2,385,411	+		CCNA_02236	0.45	+0.0
2,385,430	-		CCNA_02236	0.47	-2.5
2,385,520	-		CCNA_02236	0.57	-2.5
2,385,545	+		CCNA_02236	0.60	+0.0
2,385,548	-		CCNA_02236	0.60	-3.2
2,385,553	-		CCNA_02236	0.61	-1.5
2,385,635	-		CCNA_02236	0.70	-2.4
2,385,649	+		CCNA_02236	0.72	-1.8
2,385,709	-		CCNA_02236	0.78	-2.1
2,385,711	+		CCNA_02236	0.78	-2.6
2,385,726	+		CCNA_02236	0.80	+2.0
2,385,733	+		CCNA_02236	0.81	+0.7
2,385,753	+		CCNA_02236	0.83	+2.0
2,385,802	-				+2.3
2,385,813	+				-0.8
2,385,828	-				-2.0
2,385,842	+				+1.0
2,385,847	+				+0.0
2,385,850	-				+0.0
2,385,856	+				-1.3
2,385,895	+				+0.0
2,385,905	-				-0.5