Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16635

Experiment: Fusidic 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16625 and BWI76_RS16630 are separated by 18 nucleotidesBWI76_RS16630 and BWI76_RS16635 are separated by 88 nucleotidesBWI76_RS16635 and BWI76_RS16640 are separated by 225 nucleotidesBWI76_RS16640 and BWI76_RS16645 are separated by 9 nucleotides BWI76_RS16625: BWI76_RS16625 - putative oxidoreductase, at 3,442,415 to 3,443,299 _RS16625 BWI76_RS16630: BWI76_RS16630 - MBL fold metallo-hydrolase, at 3,443,318 to 3,444,124 _RS16630 BWI76_RS16635: BWI76_RS16635 - carbonate dehydratase, at 3,444,213 to 3,444,848 _RS16635 BWI76_RS16640: BWI76_RS16640 - threonine transporter, at 3,445,074 to 3,445,703 _RS16640 BWI76_RS16645: BWI76_RS16645 - DeoR family transcriptional regulator, at 3,445,713 to 3,446,483 _RS16645 Position (kb) 3444 3445Strain fitness (log2 ratio) -1 0 1at 3443.215 kb on + strandat 3443.399 kb on + strand, within BWI76_RS16630at 3443.415 kb on + strand, within BWI76_RS16630at 3443.588 kb on + strand, within BWI76_RS16630at 3443.596 kb on - strand, within BWI76_RS16630at 3443.596 kb on - strand, within BWI76_RS16630at 3443.672 kb on - strand, within BWI76_RS16630at 3443.779 kb on - strand, within BWI76_RS16630at 3443.952 kb on + strand, within BWI76_RS16630at 3444.163 kb on - strandat 3444.163 kb on - strandat 3444.163 kb on - strandat 3444.184 kb on + strandat 3444.202 kb on - strandat 3444.637 kb on - strand, within BWI76_RS16635at 3444.637 kb on - strand, within BWI76_RS16635at 3444.738 kb on - strand, within BWI76_RS16635at 3444.963 kb on + strandat 3445.112 kb on - strandat 3445.124 kb on + strandat 3445.320 kb on - strand, within BWI76_RS16640at 3445.342 kb on - strand, within BWI76_RS16640

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
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3,443,215 + +0.6
3,443,399 + BWI76_RS16630 0.10 -0.3
3,443,415 + BWI76_RS16630 0.12 -1.0
3,443,588 + BWI76_RS16630 0.33 +0.1
3,443,596 - BWI76_RS16630 0.34 +0.6
3,443,596 - BWI76_RS16630 0.34 -0.2
3,443,672 - BWI76_RS16630 0.44 +0.1
3,443,779 - BWI76_RS16630 0.57 -0.3
3,443,952 + BWI76_RS16630 0.79 -0.5
3,444,163 - -0.2
3,444,163 - -0.3
3,444,163 - +0.0
3,444,184 + -0.3
3,444,202 - +0.1
3,444,637 - BWI76_RS16635 0.67 -0.4
3,444,637 - BWI76_RS16635 0.67 +0.6
3,444,738 - BWI76_RS16635 0.83 +0.1
3,444,963 + +0.4
3,445,112 - -0.5
3,445,124 + -0.2
3,445,320 - BWI76_RS16640 0.39 -0.8
3,445,342 - BWI76_RS16640 0.43 -0.8

Or see this region's nucleotide sequence