Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16135

Experiment: Fusidic 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16130 and BWI76_RS16135 are separated by 9 nucleotidesBWI76_RS16135 and BWI76_RS16140 are separated by 10 nucleotidesBWI76_RS16140 and BWI76_RS16145 are separated by 10 nucleotides BWI76_RS16130: BWI76_RS16130 - 3-carboxy-cis,cis-muconate cycloisomerase, at 3,346,388 to 3,347,740 _RS16130 BWI76_RS16135: BWI76_RS16135 - acetyl-CoA acetyltransferase, at 3,347,750 to 3,348,952 _RS16135 BWI76_RS16140: BWI76_RS16140 - 3-oxoadipate CoA-transferase, at 3,348,963 to 3,349,619 _RS16140 BWI76_RS16145: BWI76_RS16145 - 3-oxoadipate CoA-transferase, at 3,349,630 to 3,350,316 _RS16145 Position (kb) 3347 3348 3349Strain fitness (log2 ratio) -1 0 1at 3346.851 kb on + strand, within BWI76_RS16130at 3347.026 kb on - strand, within BWI76_RS16130at 3347.070 kb on - strand, within BWI76_RS16130at 3347.259 kb on - strand, within BWI76_RS16130at 3347.785 kb on - strandat 3347.918 kb on + strand, within BWI76_RS16135at 3347.941 kb on + strand, within BWI76_RS16135at 3347.949 kb on - strand, within BWI76_RS16135at 3348.604 kb on - strand, within BWI76_RS16135at 3349.004 kb on + strandat 3349.401 kb on - strand, within BWI76_RS16140at 3349.411 kb on + strand, within BWI76_RS16140

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
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3,346,851 + BWI76_RS16130 0.34 -0.4
3,347,026 - BWI76_RS16130 0.47 +0.3
3,347,070 - BWI76_RS16130 0.50 +0.0
3,347,259 - BWI76_RS16130 0.64 -0.2
3,347,785 - -0.3
3,347,918 + BWI76_RS16135 0.14 -0.4
3,347,941 + BWI76_RS16135 0.16 +0.5
3,347,949 - BWI76_RS16135 0.17 +0.1
3,348,604 - BWI76_RS16135 0.71 +0.7
3,349,004 + +1.6
3,349,401 - BWI76_RS16140 0.67 -0.7
3,349,411 + BWI76_RS16140 0.68 -0.5

Or see this region's nucleotide sequence