Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13025

Experiment: Fusidic 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13020 and BWI76_RS13025 are separated by 137 nucleotidesBWI76_RS13025 and BWI76_RS13030 are separated by 214 nucleotides BWI76_RS13020: BWI76_RS13020 - NmrA family protein, at 2,716,832 to 2,717,821 _RS13020 BWI76_RS13025: BWI76_RS13025 - histidine phosphatase family protein, at 2,717,959 to 2,718,579 _RS13025 BWI76_RS13030: BWI76_RS13030 - site-specific recombinase, phage integrase family protein, at 2,718,794 to 2,719,396 _RS13030 Position (kb) 2717 2718 2719Strain fitness (log2 ratio) -1 0 1at 2717.120 kb on + strand, within BWI76_RS13020at 2717.144 kb on - strand, within BWI76_RS13020at 2717.359 kb on + strand, within BWI76_RS13020at 2717.457 kb on - strand, within BWI76_RS13020at 2717.654 kb on + strand, within BWI76_RS13020at 2717.774 kb on + strandat 2718.049 kb on + strand, within BWI76_RS13025at 2718.294 kb on + strand, within BWI76_RS13025at 2718.419 kb on + strand, within BWI76_RS13025at 2718.503 kb on + strand, within BWI76_RS13025at 2718.633 kb on + strandat 2718.776 kb on + strandat 2719.149 kb on + strand, within BWI76_RS13030at 2719.174 kb on + strand, within BWI76_RS13030at 2719.460 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
remove
2,717,120 + BWI76_RS13020 0.29 -0.0
2,717,144 - BWI76_RS13020 0.32 +1.2
2,717,359 + BWI76_RS13020 0.53 -0.0
2,717,457 - BWI76_RS13020 0.63 +0.9
2,717,654 + BWI76_RS13020 0.83 -1.3
2,717,774 + +0.3
2,718,049 + BWI76_RS13025 0.14 -0.1
2,718,294 + BWI76_RS13025 0.54 -0.4
2,718,419 + BWI76_RS13025 0.74 +0.3
2,718,503 + BWI76_RS13025 0.88 -0.2
2,718,633 + +0.2
2,718,776 + +1.1
2,719,149 + BWI76_RS13030 0.59 -0.7
2,719,174 + BWI76_RS13030 0.63 -0.2
2,719,460 + +0.6

Or see this region's nucleotide sequence