Experiment: Fusidic 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11360 and BWI76_RS11365 are separated by 36 nucleotides BWI76_RS11365 and BWI76_RS11370 are separated by 0 nucleotides BWI76_RS11370 and BWI76_RS11375 overlap by 4 nucleotides BWI76_RS11375 and BWI76_RS11380 overlap by 4 nucleotides
BWI76_RS11360: BWI76_RS11360 - L-asparaginase, at 2,394,301 to 2,395,344
_RS11360
BWI76_RS11365: BWI76_RS11365 - iron ABC transporter, at 2,395,381 to 2,396,148
_RS11365
BWI76_RS11370: BWI76_RS11370 - iron-dicitrate transporter subunit FecD, at 2,396,149 to 2,397,102
_RS11370
BWI76_RS11375: BWI76_RS11375 - iron-dicitrate transporter permease subunit, at 2,397,099 to 2,398,097
_RS11375
BWI76_RS11380: BWI76_RS11380 - iron-dicitrate transporter substrate-binding subunit, at 2,398,094 to 2,398,996
_RS11380
Position (kb)
2396
2397
2398 Strain fitness (log2 ratio)
-1
0
1
2 at 2395.329 kb on + strand at 2395.541 kb on + strand, within BWI76_RS11365 at 2395.551 kb on + strand, within BWI76_RS11365 at 2395.784 kb on - strand, within BWI76_RS11365 at 2396.128 kb on - strand at 2396.177 kb on + strand at 2396.210 kb on + strand at 2396.870 kb on + strand, within BWI76_RS11370 at 2397.009 kb on + strand at 2397.136 kb on + strand at 2397.144 kb on - strand at 2397.183 kb on + strand at 2397.191 kb on - strand at 2397.264 kb on + strand, within BWI76_RS11375 at 2397.605 kb on - strand, within BWI76_RS11375 at 2397.760 kb on + strand, within BWI76_RS11375
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml remove 2,395,329 + -0.1 2,395,541 + BWI76_RS11365 0.21 +1.2 2,395,551 + BWI76_RS11365 0.22 +0.4 2,395,784 - BWI76_RS11365 0.52 -0.1 2,396,128 - -0.3 2,396,177 + +0.4 2,396,210 + +0.0 2,396,870 + BWI76_RS11370 0.76 -0.8 2,397,009 + +1.8 2,397,136 + -0.7 2,397,144 - -0.4 2,397,183 + +0.0 2,397,191 - -0.4 2,397,264 + BWI76_RS11375 0.17 -0.1 2,397,605 - BWI76_RS11375 0.51 -0.2 2,397,760 + BWI76_RS11375 0.66 -0.2
Or see this region's nucleotide sequence