Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09765

Experiment: Fusidic 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09760 and BWI76_RS09765 are separated by 147 nucleotidesBWI76_RS09765 and BWI76_RS09770 overlap by 54 nucleotidesBWI76_RS09770 and BWI76_RS09775 overlap by 68 nucleotidesBWI76_RS09775 and BWI76_RS09780 are separated by 137 nucleotides BWI76_RS09760: BWI76_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,047,316 to 2,048,599 _RS09760 BWI76_RS09765: BWI76_RS09765 - metalloprotease, at 2,048,747 to 2,049,514 _RS09765 BWI76_RS09770: BWI76_RS09770 - hypothetical protein, at 2,049,461 to 2,049,753 _RS09770 BWI76_RS09775: BWI76_RS09775 - cytidylate kinase, at 2,049,686 to 2,050,369 _RS09775 BWI76_RS09780: BWI76_RS09780 - 30S ribosomal protein S1, at 2,050,507 to 2,052,180 _RS09780 Position (kb) 2048 2049 2050Strain fitness (log2 ratio) -1 0 1at 2048.002 kb on + strand, within BWI76_RS09760at 2048.002 kb on + strand, within BWI76_RS09760at 2048.002 kb on + strand, within BWI76_RS09760at 2048.119 kb on - strand, within BWI76_RS09760at 2048.366 kb on + strand, within BWI76_RS09760at 2048.434 kb on + strand, within BWI76_RS09760at 2048.593 kb on + strandat 2048.593 kb on + strandat 2048.837 kb on - strand, within BWI76_RS09765at 2049.152 kb on - strand, within BWI76_RS09765at 2049.624 kb on - strand, within BWI76_RS09770

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
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2,048,002 + BWI76_RS09760 0.53 -0.9
2,048,002 + BWI76_RS09760 0.53 +0.3
2,048,002 + BWI76_RS09760 0.53 -0.2
2,048,119 - BWI76_RS09760 0.63 +1.7
2,048,366 + BWI76_RS09760 0.82 +0.2
2,048,434 + BWI76_RS09760 0.87 +0.0
2,048,593 + -0.1
2,048,593 + -1.0
2,048,837 - BWI76_RS09765 0.12 -0.6
2,049,152 - BWI76_RS09765 0.53 -0.8
2,049,624 - BWI76_RS09770 0.56 -0.1

Or see this region's nucleotide sequence