Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06385

Experiment: Fusidic 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06380 and BWI76_RS06385 are separated by 18 nucleotidesBWI76_RS06385 and BWI76_RS06390 are separated by 0 nucleotidesBWI76_RS06390 and BWI76_RS06395 are separated by 198 nucleotides BWI76_RS06380: BWI76_RS06380 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,340,609 to 1,342,471 _RS06380 BWI76_RS06385: BWI76_RS06385 - (2E,6E)-farnesyl diphosphate synthase, at 1,342,490 to 1,343,389 _RS06385 BWI76_RS06390: BWI76_RS06390 - exodeoxyribonuclease VII small subunit, at 1,343,390 to 1,343,632 _RS06390 BWI76_RS06395: BWI76_RS06395 - tRNA 4-thiouridine(8) synthase ThiI, at 1,343,831 to 1,345,279 _RS06395 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -1 0 1at 1343.737 kb on + strandat 1343.754 kb on + strandat 1344.077 kb on + strand, within BWI76_RS06395at 1344.140 kb on + strand, within BWI76_RS06395

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
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1,343,737 + -0.4
1,343,754 + +0.1
1,344,077 + BWI76_RS06395 0.17 -0.3
1,344,140 + BWI76_RS06395 0.21 -0.2

Or see this region's nucleotide sequence