Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4757 and Psyr_4758 are separated by 368 nucleotides Psyr_4758 and Psyr_4759 are separated by 98 nucleotides Psyr_4759 and Psyr_4760 are separated by 9 nucleotides Psyr_4760 and Psyr_4761 are separated by 97 nucleotides
Psyr_4757: Psyr_4757 - transcriptional regulator, TetR family, at 5,633,856 to 5,634,518
_4757
Psyr_4758: Psyr_4758 - Phosphopantetheine adenylyltransferase, at 5,634,887 to 5,635,366
_4758
Psyr_4759: Psyr_4759 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 5,635,465 to 5,635,716
_4759
Psyr_4760: Psyr_4760 - conserved hypothetical protein, at 5,635,726 to 5,636,064
_4760
Psyr_4761: Psyr_4761 - DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase, at 5,636,162 to 5,636,974
_4761
Position (kb) 5634
5635
5636 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.951 kb on + strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.952 kb on - strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.955 kb on + strand, within Psyr_4757 at 5633.956 kb on - strand, within Psyr_4757 at 5633.956 kb on - strand, within Psyr_4757 at 5633.962 kb on + strand, within Psyr_4757 at 5633.962 kb on + strand, within Psyr_4757 at 5633.962 kb on + strand, within Psyr_4757 at 5634.124 kb on + strand, within Psyr_4757 at 5634.125 kb on - strand, within Psyr_4757 at 5634.265 kb on + strand, within Psyr_4757 at 5634.265 kb on + strand, within Psyr_4757 at 5634.266 kb on - strand, within Psyr_4757 at 5634.385 kb on + strand, within Psyr_4757 at 5634.389 kb on - strand, within Psyr_4757 at 5634.389 kb on - strand, within Psyr_4757 at 5634.389 kb on - strand, within Psyr_4757 at 5634.389 kb on - strand, within Psyr_4757 at 5634.413 kb on + strand, within Psyr_4757 at 5634.443 kb on + strand, within Psyr_4757 at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.536 kb on + strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.537 kb on - strand at 5634.611 kb on + strand at 5634.611 kb on + strand at 5634.611 kb on + strand at 5634.611 kb on + strand at 5634.611 kb on + strand at 5634.612 kb on - strand at 5634.612 kb on - strand at 5634.612 kb on - strand at 5634.612 kb on - strand at 5634.612 kb on - strand at 5634.612 kb on - strand at 5634.700 kb on - strand at 5634.714 kb on - strand at 5634.714 kb on - strand at 5634.744 kb on + strand at 5634.796 kb on - strand at 5635.365 kb on - strand at 5635.428 kb on + strand at 5635.727 kb on + strand at 5635.728 kb on - strand at 5635.958 kb on + strand, within Psyr_4760 at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.094 kb on + strand at 5636.094 kb on + strand at 5636.094 kb on + strand at 5636.095 kb on - strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.109 kb on - strand at 5636.109 kb on - strand at 5636.109 kb on - strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.128 kb on - strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.184 kb on + strand at 5636.185 kb on - strand at 5636.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 5,633,951 + Psyr_4757 0.14 -1.6 5,633,951 + Psyr_4757 0.14 -2.2 5,633,951 + Psyr_4757 0.14 +0.4 5,633,951 + Psyr_4757 0.14 -1.2 5,633,951 + Psyr_4757 0.14 -1.6 5,633,951 + Psyr_4757 0.14 +0.1 5,633,951 + Psyr_4757 0.14 +0.9 5,633,951 + Psyr_4757 0.14 -0.3 5,633,951 + Psyr_4757 0.14 +0.0 5,633,951 + Psyr_4757 0.14 +0.5 5,633,951 + Psyr_4757 0.14 +0.9 5,633,951 + Psyr_4757 0.14 +0.1 5,633,951 + Psyr_4757 0.14 -0.1 5,633,952 - Psyr_4757 0.14 +0.8 5,633,952 - Psyr_4757 0.14 +0.9 5,633,952 - Psyr_4757 0.14 -0.0 5,633,952 - Psyr_4757 0.14 +0.2 5,633,952 - Psyr_4757 0.14 -0.6 5,633,952 - Psyr_4757 0.14 +1.1 5,633,952 - Psyr_4757 0.14 +1.6 5,633,952 - Psyr_4757 0.14 +0.4 5,633,952 - Psyr_4757 0.14 +1.2 5,633,952 - Psyr_4757 0.14 +0.1 5,633,955 + Psyr_4757 0.15 +0.4 5,633,955 + Psyr_4757 0.15 -0.2 5,633,955 + Psyr_4757 0.15 +0.4 5,633,955 + Psyr_4757 0.15 -2.2 5,633,955 + Psyr_4757 0.15 -1.2 5,633,955 + Psyr_4757 0.15 +0.6 5,633,955 + Psyr_4757 0.15 -0.8 5,633,956 - Psyr_4757 0.15 +0.6 5,633,956 - Psyr_4757 0.15 +1.9 5,633,962 + Psyr_4757 0.16 +0.2 5,633,962 + Psyr_4757 0.16 +1.8 5,633,962 + Psyr_4757 0.16 -0.5 5,634,124 + Psyr_4757 0.40 +0.2 5,634,125 - Psyr_4757 0.41 -0.2 5,634,265 + Psyr_4757 0.62 +0.4 5,634,265 + Psyr_4757 0.62 +0.0 5,634,266 - Psyr_4757 0.62 +0.5 5,634,385 + Psyr_4757 0.80 +0.6 5,634,389 - Psyr_4757 0.80 -0.8 5,634,389 - Psyr_4757 0.80 +0.1 5,634,389 - Psyr_4757 0.80 +0.9 5,634,389 - Psyr_4757 0.80 +0.6 5,634,413 + Psyr_4757 0.84 +1.4 5,634,443 + Psyr_4757 0.89 +0.1 5,634,536 + +0.5 5,634,536 + -1.6 5,634,536 + -0.5 5,634,536 + -1.2 5,634,536 + +0.6 5,634,536 + -0.8 5,634,536 + +0.4 5,634,537 - -0.5 5,634,537 - +0.5 5,634,537 - +0.4 5,634,537 - +0.3 5,634,537 - +0.5 5,634,537 - +0.1 5,634,537 - -0.2 5,634,537 - -0.2 5,634,537 - +0.9 5,634,537 - -0.9 5,634,537 - -0.4 5,634,537 - +0.1 5,634,611 + -0.0 5,634,611 + +0.5 5,634,611 + +0.2 5,634,611 + -0.6 5,634,611 + +0.8 5,634,612 - +1.1 5,634,612 - +0.1 5,634,612 - -0.1 5,634,612 - -1.1 5,634,612 - +1.5 5,634,612 - -0.4 5,634,700 - +0.4 5,634,714 - +0.4 5,634,714 - -0.8 5,634,744 + -0.1 5,634,796 - -1.0 5,635,365 - -0.5 5,635,428 + -0.2 5,635,727 + +0.0 5,635,728 - +0.7 5,635,958 + Psyr_4760 0.68 +0.8 5,636,090 + +0.1 5,636,090 + +0.1 5,636,090 + +0.8 5,636,090 + -1.0 5,636,090 + -1.6 5,636,090 + -0.2 5,636,090 + -1.6 5,636,090 + -0.0 5,636,091 - -0.2 5,636,091 - +0.4 5,636,091 - -1.6 5,636,091 - +0.1 5,636,091 - -0.2 5,636,094 + -0.4 5,636,094 + +1.2 5,636,094 + -1.2 5,636,095 - +0.8 5,636,108 + +0.4 5,636,108 + +0.2 5,636,108 + +1.1 5,636,108 + -0.8 5,636,109 - +0.0 5,636,109 - -0.1 5,636,109 - -0.1 5,636,110 + -0.6 5,636,110 + -1.6 5,636,110 + +0.4 5,636,110 + -0.6 5,636,111 - -0.8 5,636,111 - +0.2 5,636,111 - +0.5 5,636,111 - +0.2 5,636,111 - +0.6 5,636,111 - +0.4 5,636,128 - -0.2 5,636,158 + -0.1 5,636,158 + -0.6 5,636,158 + -0.5 5,636,158 + -0.1 5,636,158 + -2.2 5,636,159 - -0.6 5,636,159 - -0.2 5,636,159 - +0.1 5,636,159 - +3.4 5,636,184 + +0.4 5,636,185 - +0.0 5,636,185 - -0.6
Or see this region's nucleotide sequence