Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4757

Experiment: Citric Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4755 and Psyr_4756 are separated by 7 nucleotidesPsyr_4756 and Psyr_4757 are separated by 54 nucleotidesPsyr_4757 and Psyr_4758 are separated by 368 nucleotidesPsyr_4758 and Psyr_4759 are separated by 98 nucleotides Psyr_4755: Psyr_4755 - hydrolase, alpha/beta fold family, at 5,631,905 to 5,632,939 _4755 Psyr_4756: Psyr_4756 - 3-mercaptopyruvate sulfurtransferase, at 5,632,947 to 5,633,801 _4756 Psyr_4757: Psyr_4757 - transcriptional regulator, TetR family, at 5,633,856 to 5,634,518 _4757 Psyr_4758: Psyr_4758 - Phosphopantetheine adenylyltransferase, at 5,634,887 to 5,635,366 _4758 Psyr_4759: Psyr_4759 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 5,635,465 to 5,635,716 _4759 Position (kb) 5633 5634 5635Strain fitness (log2 ratio) -2 -1 0 1 2at 5632.868 kb on + strandat 5632.869 kb on - strandat 5632.871 kb on + strandat 5632.871 kb on + strandat 5632.872 kb on - strandat 5632.872 kb on - strandat 5632.900 kb on - strandat 5633.008 kb on + strandat 5633.009 kb on - strandat 5633.009 kb on - strandat 5633.009 kb on - strandat 5633.009 kb on - strandat 5633.009 kb on - strandat 5633.083 kb on + strand, within Psyr_4756at 5633.214 kb on - strand, within Psyr_4756at 5633.214 kb on - strand, within Psyr_4756at 5633.241 kb on + strand, within Psyr_4756at 5633.241 kb on + strand, within Psyr_4756at 5633.241 kb on + strand, within Psyr_4756at 5633.242 kb on - strand, within Psyr_4756at 5633.444 kb on - strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.497 kb on + strand, within Psyr_4756at 5633.498 kb on - strand, within Psyr_4756at 5633.498 kb on - strand, within Psyr_4756at 5633.518 kb on + strand, within Psyr_4756at 5633.518 kb on + strand, within Psyr_4756at 5633.518 kb on + strand, within Psyr_4756at 5633.519 kb on - strand, within Psyr_4756at 5633.684 kb on - strand, within Psyr_4756at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.951 kb on + strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.952 kb on - strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.955 kb on + strand, within Psyr_4757at 5633.956 kb on - strand, within Psyr_4757at 5633.956 kb on - strand, within Psyr_4757at 5633.962 kb on + strand, within Psyr_4757at 5633.962 kb on + strand, within Psyr_4757at 5633.962 kb on + strand, within Psyr_4757at 5634.124 kb on + strand, within Psyr_4757at 5634.125 kb on - strand, within Psyr_4757at 5634.265 kb on + strand, within Psyr_4757at 5634.265 kb on + strand, within Psyr_4757at 5634.266 kb on - strand, within Psyr_4757at 5634.385 kb on + strand, within Psyr_4757at 5634.389 kb on - strand, within Psyr_4757at 5634.389 kb on - strand, within Psyr_4757at 5634.389 kb on - strand, within Psyr_4757at 5634.389 kb on - strand, within Psyr_4757at 5634.413 kb on + strand, within Psyr_4757at 5634.443 kb on + strand, within Psyr_4757at 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.536 kb on + strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.537 kb on - strandat 5634.611 kb on + strandat 5634.611 kb on + strandat 5634.611 kb on + strandat 5634.611 kb on + strandat 5634.611 kb on + strandat 5634.612 kb on - strandat 5634.612 kb on - strandat 5634.612 kb on - strandat 5634.612 kb on - strandat 5634.612 kb on - strandat 5634.612 kb on - strandat 5634.700 kb on - strandat 5634.714 kb on - strandat 5634.714 kb on - strandat 5634.744 kb on + strandat 5634.796 kb on - strandat 5635.365 kb on - strandat 5635.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
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5,632,868 + +0.4
5,632,869 - +1.4
5,632,871 + -0.1
5,632,871 + -1.2
5,632,872 - +0.4
5,632,872 - +0.0
5,632,900 - -1.1
5,633,008 + +0.1
5,633,009 - -1.6
5,633,009 - -0.2
5,633,009 - +0.1
5,633,009 - -1.6
5,633,009 - -0.2
5,633,083 + Psyr_4756 0.16 -0.8
5,633,214 - Psyr_4756 0.31 +0.1
5,633,214 - Psyr_4756 0.31 -1.2
5,633,241 + Psyr_4756 0.34 -1.1
5,633,241 + Psyr_4756 0.34 +1.2
5,633,241 + Psyr_4756 0.34 +0.4
5,633,242 - Psyr_4756 0.35 -0.8
5,633,444 - Psyr_4756 0.58 -1.8
5,633,497 + Psyr_4756 0.64 -0.2
5,633,497 + Psyr_4756 0.64 -2.0
5,633,497 + Psyr_4756 0.64 +0.4
5,633,497 + Psyr_4756 0.64 +0.4
5,633,497 + Psyr_4756 0.64 -2.0
5,633,497 + Psyr_4756 0.64 +0.2
5,633,497 + Psyr_4756 0.64 -0.9
5,633,497 + Psyr_4756 0.64 -0.6
5,633,498 - Psyr_4756 0.64 -1.0
5,633,498 - Psyr_4756 0.64 +0.4
5,633,518 + Psyr_4756 0.67 +0.5
5,633,518 + Psyr_4756 0.67 -0.1
5,633,518 + Psyr_4756 0.67 +1.2
5,633,519 - Psyr_4756 0.67 -1.2
5,633,684 - Psyr_4756 0.86 -1.4
5,633,951 + Psyr_4757 0.14 -1.6
5,633,951 + Psyr_4757 0.14 -2.2
5,633,951 + Psyr_4757 0.14 +0.4
5,633,951 + Psyr_4757 0.14 -1.2
5,633,951 + Psyr_4757 0.14 -1.6
5,633,951 + Psyr_4757 0.14 +0.1
5,633,951 + Psyr_4757 0.14 +0.9
5,633,951 + Psyr_4757 0.14 -0.3
5,633,951 + Psyr_4757 0.14 +0.0
5,633,951 + Psyr_4757 0.14 +0.5
5,633,951 + Psyr_4757 0.14 +0.9
5,633,951 + Psyr_4757 0.14 +0.1
5,633,951 + Psyr_4757 0.14 -0.1
5,633,952 - Psyr_4757 0.14 +0.8
5,633,952 - Psyr_4757 0.14 +0.9
5,633,952 - Psyr_4757 0.14 -0.0
5,633,952 - Psyr_4757 0.14 +0.2
5,633,952 - Psyr_4757 0.14 -0.6
5,633,952 - Psyr_4757 0.14 +1.1
5,633,952 - Psyr_4757 0.14 +1.6
5,633,952 - Psyr_4757 0.14 +0.4
5,633,952 - Psyr_4757 0.14 +1.2
5,633,952 - Psyr_4757 0.14 +0.1
5,633,955 + Psyr_4757 0.15 +0.4
5,633,955 + Psyr_4757 0.15 -0.2
5,633,955 + Psyr_4757 0.15 +0.4
5,633,955 + Psyr_4757 0.15 -2.2
5,633,955 + Psyr_4757 0.15 -1.2
5,633,955 + Psyr_4757 0.15 +0.6
5,633,955 + Psyr_4757 0.15 -0.8
5,633,956 - Psyr_4757 0.15 +0.6
5,633,956 - Psyr_4757 0.15 +1.9
5,633,962 + Psyr_4757 0.16 +0.2
5,633,962 + Psyr_4757 0.16 +1.8
5,633,962 + Psyr_4757 0.16 -0.5
5,634,124 + Psyr_4757 0.40 +0.2
5,634,125 - Psyr_4757 0.41 -0.2
5,634,265 + Psyr_4757 0.62 +0.4
5,634,265 + Psyr_4757 0.62 +0.0
5,634,266 - Psyr_4757 0.62 +0.5
5,634,385 + Psyr_4757 0.80 +0.6
5,634,389 - Psyr_4757 0.80 -0.8
5,634,389 - Psyr_4757 0.80 +0.1
5,634,389 - Psyr_4757 0.80 +0.9
5,634,389 - Psyr_4757 0.80 +0.6
5,634,413 + Psyr_4757 0.84 +1.4
5,634,443 + Psyr_4757 0.89 +0.1
5,634,536 + +0.5
5,634,536 + -1.6
5,634,536 + -0.5
5,634,536 + -1.2
5,634,536 + +0.6
5,634,536 + -0.8
5,634,536 + +0.4
5,634,537 - -0.5
5,634,537 - +0.5
5,634,537 - +0.4
5,634,537 - +0.3
5,634,537 - +0.5
5,634,537 - +0.1
5,634,537 - -0.2
5,634,537 - -0.2
5,634,537 - +0.9
5,634,537 - -0.9
5,634,537 - -0.4
5,634,537 - +0.1
5,634,611 + -0.0
5,634,611 + +0.5
5,634,611 + +0.2
5,634,611 + -0.6
5,634,611 + +0.8
5,634,612 - +1.1
5,634,612 - +0.1
5,634,612 - -0.1
5,634,612 - -1.1
5,634,612 - +1.5
5,634,612 - -0.4
5,634,700 - +0.4
5,634,714 - +0.4
5,634,714 - -0.8
5,634,744 + -0.1
5,634,796 - -1.0
5,635,365 - -0.5
5,635,428 + -0.2

Or see this region's nucleotide sequence