Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4322

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
5,173,482	+				-1.5
5,173,498	+				-1.5
5,173,551	+				-0.1
5,173,552	-				+0.1
5,173,552	-				+1.0
5,173,563	+				-0.1
5,173,569	+				-0.5
5,173,569	+				-0.6
5,173,569	+				+0.8
5,173,569	+				+0.6
5,173,570	-				-0.1
5,173,570	-				+0.3
5,173,570	-				+0.8
5,173,570	-				+0.4
5,173,570	-				-1.7
5,173,570	-				+1.0
5,173,570	-				-0.5
5,173,573	+				-0.2
5,173,573	+				-1.5
5,173,573	+				+1.6
5,173,573	+				-0.2
5,173,574	-				-0.2
5,173,574	-				-3.1
5,173,574	-				-0.7
5,173,583	+				+0.3
5,173,594	+				+0.2
5,173,594	+				-0.8
5,173,594	+				-1.0
5,173,595	-				+1.4
5,173,595	-				+0.3
5,173,595	-				-1.0
5,173,595	-				-0.5
5,173,595	-				-1.6
5,173,595	-				-0.4
5,173,612	+				+0.0
5,173,613	-				-0.8
5,173,671	-				-0.3
5,173,737	+		Psyr_4321	0.17	-0.2
5,173,751	+		Psyr_4321	0.19	-0.1
5,173,751	+		Psyr_4321	0.19	+1.8
5,173,751	+		Psyr_4321	0.19	+1.2
5,173,751	+		Psyr_4321	0.19	-1.4
5,173,751	+		Psyr_4321	0.19	-0.3
5,173,751	+		Psyr_4321	0.19	+0.9
5,173,751	+		Psyr_4321	0.19	-1.2
5,173,752	-		Psyr_4321	0.19	+0.4
5,173,752	-		Psyr_4321	0.19	+0.4
5,173,752	-		Psyr_4321	0.19	-1.1
5,173,752	-		Psyr_4321	0.19	-0.1
5,173,752	-		Psyr_4321	0.19	-0.2
5,173,752	-		Psyr_4321	0.19	+0.4
5,173,752	-		Psyr_4321	0.19	+0.2
5,173,796	+		Psyr_4321	0.24	-0.3
5,173,797	-		Psyr_4321	0.24	-0.5
5,173,807	+		Psyr_4321	0.25	-1.6
5,173,808	-		Psyr_4321	0.25	-0.2
5,173,920	+		Psyr_4321	0.37	-2.1
5,173,920	+		Psyr_4321	0.37	-0.9
5,173,920	+		Psyr_4321	0.37	-0.5
5,173,920	+		Psyr_4321	0.37	+0.4
5,173,920	+		Psyr_4321	0.37	+0.5
5,173,921	-		Psyr_4321	0.38	+0.0
5,173,921	-		Psyr_4321	0.38	+0.0
5,173,921	-		Psyr_4321	0.38	+0.6
5,173,921	-		Psyr_4321	0.38	-1.4
5,173,921	-		Psyr_4321	0.38	+0.4
5,173,921	-		Psyr_4321	0.38	-1.1
5,173,921	-		Psyr_4321	0.38	-1.1
5,173,921	-		Psyr_4321	0.38	-2.4
5,173,921	-		Psyr_4321	0.38	-0.8
5,173,921	-		Psyr_4321	0.38	+0.1
5,173,924	+		Psyr_4321	0.38	+0.2
5,173,924	+		Psyr_4321	0.38	-0.0
5,173,924	+		Psyr_4321	0.38	-0.8
5,173,924	+		Psyr_4321	0.38	-1.8
5,173,924	+		Psyr_4321	0.38	+0.2
5,173,925	-		Psyr_4321	0.38	+0.0
5,173,925	-		Psyr_4321	0.38	-1.4
5,173,925	-		Psyr_4321	0.38	+1.2
5,173,925	-		Psyr_4321	0.38	-0.7
5,173,925	-		Psyr_4321	0.38	+0.8
5,173,925	-		Psyr_4321	0.38	-0.3
5,173,925	-		Psyr_4321	0.38	+2.2
5,173,925	-		Psyr_4321	0.38	-0.6
5,173,956	+		Psyr_4321	0.41	-1.4
5,173,956	+		Psyr_4321	0.41	-1.4
5,173,957	-		Psyr_4321	0.42	-1.7
5,173,959	+		Psyr_4321	0.42	+0.6
5,173,993	+		Psyr_4321	0.46	-1.5
5,173,993	+		Psyr_4321	0.46	+1.8
5,173,996	-		Psyr_4321	0.46	-1.1
5,174,029	+		Psyr_4321	0.50	+0.2
5,174,067	-		Psyr_4321	0.54	+0.8
5,174,091	+		Psyr_4321	0.56	-3.3
5,174,104	-		Psyr_4321	0.58	+0.6
5,174,105	+		Psyr_4321	0.58	-0.8
5,174,106	-		Psyr_4321	0.58	-0.8
5,174,109	-		Psyr_4321	0.58	-1.0
5,174,187	+		Psyr_4321	0.67	+0.9
5,174,188	-		Psyr_4321	0.67	-0.1
5,174,244	+		Psyr_4321	0.73	-0.4
5,174,277	+		Psyr_4321	0.77	-0.2
5,174,278	-		Psyr_4321	0.77	-1.8
5,174,300	-		Psyr_4321	0.80	-0.4
5,174,300	-		Psyr_4321	0.80	+1.2
5,174,338	+				-1.4
5,174,339	-		Psyr_4321	0.84	-0.2
5,174,339	-		Psyr_4321	0.84	+1.1
5,174,343	+		Psyr_4321	0.84	+0.2
5,174,343	+		Psyr_4321	0.84	-0.7
5,174,344	-		Psyr_4321	0.84	+0.1
5,174,347	+		Psyr_4321	0.85	+0.3
5,174,347	+		Psyr_4321	0.85	+0.7
5,174,347	+		Psyr_4321	0.85	+0.2
5,174,348	-		Psyr_4321	0.85	-0.4
5,174,392	+		Psyr_4321	0.90	+0.9
5,174,393	-		Psyr_4321	0.90	+0.6
5,174,408	+				-1.8
5,174,540	+				-1.4
5,174,540	+				+0.7
5,174,541	-				-0.3
5,174,541	-				-0.2
5,174,541	-				+0.0
5,174,576	-				-0.5
5,174,598	-		Psyr_4322	0.11	+0.5
5,174,736	+		Psyr_4322	0.23	-0.4
5,174,736	+		Psyr_4322	0.23	+0.2
5,174,736	+		Psyr_4322	0.23	+0.9
5,174,736	+		Psyr_4322	0.23	-0.1
5,174,736	+		Psyr_4322	0.23	-0.8
5,174,736	+		Psyr_4322	0.23	-0.3
5,174,736	+		Psyr_4322	0.23	+0.6
5,174,736	+		Psyr_4322	0.23	-1.0
5,174,736	+		Psyr_4322	0.23	-1.1
5,174,736	+		Psyr_4322	0.23	-0.2
5,174,736	+		Psyr_4322	0.23	-1.2
5,174,736	+		Psyr_4322	0.23	+0.6
5,174,736	+		Psyr_4322	0.23	+2.0
5,174,736	+		Psyr_4322	0.23	+1.6
5,174,736	+		Psyr_4322	0.23	-1.2
5,174,736	+		Psyr_4322	0.23	-0.6
5,174,736	+		Psyr_4322	0.23	+0.2
5,174,736	+		Psyr_4322	0.23	-0.8
5,174,736	+		Psyr_4322	0.23	+1.0
5,174,736	+		Psyr_4322	0.23	+0.3
5,174,736	+		Psyr_4322	0.23	+1.6
5,174,737	-		Psyr_4322	0.23	-0.6
5,174,737	-		Psyr_4322	0.23	-0.1
5,174,737	-		Psyr_4322	0.23	-0.8
5,174,737	-		Psyr_4322	0.23	+1.6
5,174,737	-		Psyr_4322	0.23	-0.1
5,174,737	-		Psyr_4322	0.23	-0.0
5,174,737	-		Psyr_4322	0.23	+0.1
5,174,737	-		Psyr_4322	0.23	+0.2
5,174,737	-		Psyr_4322	0.23	+1.0
5,174,737	-		Psyr_4322	0.23	+1.0
5,174,737	-		Psyr_4322	0.23	-0.2
5,174,737	-		Psyr_4322	0.23	+0.1
5,174,737	-		Psyr_4322	0.23	-0.4
5,174,741	+		Psyr_4322	0.23	+0.7
5,174,741	+		Psyr_4322	0.23	+0.9
5,174,741	+		Psyr_4322	0.23	-1.8
5,174,741	+		Psyr_4322	0.23	-1.2
5,174,742	-		Psyr_4322	0.23	+0.2
5,174,742	-		Psyr_4322	0.23	+1.4
5,174,742	-		Psyr_4322	0.23	+1.7
5,174,810	+		Psyr_4322	0.29	+0.0
5,174,810	+		Psyr_4322	0.29	-0.5
5,174,811	-		Psyr_4322	0.29	-1.1
5,174,867	+		Psyr_4322	0.33	+1.5
5,174,868	-		Psyr_4322	0.33	-0.2
5,174,879	-		Psyr_4322	0.34	+0.5
5,175,021	-		Psyr_4322	0.46	+0.4
5,175,021	-		Psyr_4322	0.46	-0.4
5,175,037	+		Psyr_4322	0.47	+0.2
5,175,037	+		Psyr_4322	0.47	+1.0
5,175,037	+		Psyr_4322	0.47	+0.4
5,175,037	+		Psyr_4322	0.47	-1.4
5,175,038	-		Psyr_4322	0.47	+3.0
5,175,038	-		Psyr_4322	0.47	+1.4
5,175,101	+		Psyr_4322	0.53	+0.2
5,175,102	-		Psyr_4322	0.53	-0.8
5,175,102	-		Psyr_4322	0.53	+0.1
5,175,102	-		Psyr_4322	0.53	-0.8
5,175,150	-		Psyr_4322	0.57	+1.2
5,175,150	-		Psyr_4322	0.57	+0.4
5,175,150	-		Psyr_4322	0.57	+1.0
5,175,152	+		Psyr_4322	0.57	-1.8
5,175,152	+		Psyr_4322	0.57	-0.4
5,175,152	+		Psyr_4322	0.57	-0.3
5,175,153	-		Psyr_4322	0.57	-1.2
5,175,153	-		Psyr_4322	0.57	-0.8
5,175,153	-		Psyr_4322	0.57	+0.2
5,175,153	-		Psyr_4322	0.57	+0.4
5,175,191	+		Psyr_4322	0.60	+0.2
5,175,192	-		Psyr_4322	0.60	+1.4
5,175,198	+		Psyr_4322	0.61	+2.0
5,175,266	+		Psyr_4322	0.66	-0.1
5,175,350	-		Psyr_4322	0.73	-1.4
5,175,351	+		Psyr_4322	0.73	-0.6
5,175,351	+		Psyr_4322	0.73	+1.6
5,175,351	+		Psyr_4322	0.73	-0.3
5,175,351	+		Psyr_4322	0.73	+1.0
5,175,352	-		Psyr_4322	0.73	-1.3
5,175,352	-		Psyr_4322	0.73	+0.8
5,175,352	-		Psyr_4322	0.73	-0.0
5,175,352	-		Psyr_4322	0.73	+0.2
5,175,352	-		Psyr_4322	0.73	-0.5
5,175,352	-		Psyr_4322	0.73	-0.2
5,175,443	+		Psyr_4322	0.81	+0.2
5,175,443	+		Psyr_4322	0.81	-0.8
5,175,444	-		Psyr_4322	0.81	+0.2
5,175,444	-		Psyr_4322	0.81	+0.0
5,175,504	+		Psyr_4322	0.86	+0.8
5,175,504	+		Psyr_4322	0.86	+0.7
5,175,504	+		Psyr_4322	0.86	+0.1
5,175,504	+		Psyr_4322	0.86	-0.4
5,175,505	-		Psyr_4322	0.86	+0.3
5,175,505	-		Psyr_4322	0.86	+0.2
5,175,533	+		Psyr_4322	0.88	+2.4
5,175,533	+		Psyr_4322	0.88	+0.0
5,175,534	-		Psyr_4322	0.88	-0.4
5,175,534	-		Psyr_4322	0.88	-1.1
5,175,534	-		Psyr_4322	0.88	+0.7
5,175,540	+		Psyr_4322	0.89	-0.4
5,175,611	+				-0.6
5,175,611	+				-0.9
5,175,611	+				+0.0
5,175,611	+				+0.0
5,175,611	+				+0.6
5,175,612	-				-0.5
5,175,648	+				-1.6
5,175,648	+				-0.4
5,175,648	+				+1.1
5,175,648	+				-0.0
5,175,648	+				+0.7
5,175,648	+				+0.7
5,175,648	+				-0.1
5,175,648	+				+0.2
5,175,648	+				+0.0
5,175,648	+				-0.4
5,175,649	-				+2.2
5,175,654	+				-1.4
5,175,654	+				+0.9
5,175,654	+				-0.1
5,175,654	+				+1.4
5,175,655	-				-0.3
5,175,655	-				-0.2
5,175,655	-				-0.5
5,175,655	-				+0.4
5,175,655	-				+0.2
5,175,673	+				+0.6
5,175,673	+				-0.1
5,175,673	+				-3.0
5,175,673	+				-0.5
5,175,673	+				-0.1
5,175,673	+				+0.1
5,175,674	-				-0.6
5,175,682	+				+1.2
5,175,699	-				-0.8
5,175,751	-				+0.5
5,175,751	-				-0.1
5,175,775	+		Psyr_4323	0.12	+0.2
5,175,775	+		Psyr_4323	0.12	-0.6
5,175,776	-		Psyr_4323	0.13	+0.6
5,175,776	-		Psyr_4323	0.13	+0.2
5,175,776	-		Psyr_4323	0.13	-1.0
5,175,776	-		Psyr_4323	0.13	+1.2
5,175,776	-		Psyr_4323	0.13	-2.8
5,175,776	-		Psyr_4323	0.13	+1.8
5,175,846	-		Psyr_4323	0.21	+1.0
5,175,882	+		Psyr_4323	0.26	+1.0
5,175,883	-		Psyr_4323	0.26	+0.0
5,175,884	+		Psyr_4323	0.26	+0.6
5,175,885	-		Psyr_4323	0.26	-0.5
5,175,885	-		Psyr_4323	0.26	+0.6
5,175,885	-		Psyr_4323	0.26	+0.6
5,175,885	-		Psyr_4323	0.26	+0.2
5,175,934	+		Psyr_4323	0.33	+0.2
5,175,934	+		Psyr_4323	0.33	+2.2
5,175,958	-		Psyr_4323	0.36	+0.5
5,176,030	+		Psyr_4323	0.45	-1.4
5,176,030	+		Psyr_4323	0.45	-1.1
5,176,030	+		Psyr_4323	0.45	+0.5
5,176,031	-		Psyr_4323	0.45	-1.4
5,176,031	-		Psyr_4323	0.45	+0.7
5,176,031	-		Psyr_4323	0.45	+0.2
5,176,062	-		Psyr_4323	0.49	-0.8
5,176,088	-		Psyr_4323	0.52	-1.4
5,176,113	+		Psyr_4323	0.55	-0.3
5,176,114	-		Psyr_4323	0.55	-0.8
5,176,123	-		Psyr_4323	0.56	+0.3
5,176,123	-		Psyr_4323	0.56	+0.2
5,176,123	-		Psyr_4323	0.56	+1.3
5,176,147	+		Psyr_4323	0.59	+1.2
5,176,180	+		Psyr_4323	0.64	-1.3
5,176,180	+		Psyr_4323	0.64	+0.5
5,176,181	-		Psyr_4323	0.64	-1.0
5,176,181	-		Psyr_4323	0.64	-1.1
5,176,181	-		Psyr_4323	0.64	-0.1
5,176,186	-		Psyr_4323	0.64	-2.1
5,176,186	-		Psyr_4323	0.64	-1.2
5,176,186	-		Psyr_4323	0.64	+0.2
5,176,186	-		Psyr_4323	0.64	+0.1
5,176,186	-		Psyr_4323	0.64	+0.2
5,176,186	-		Psyr_4323	0.64	+2.2
5,176,294	+		Psyr_4323	0.78	+0.0
5,176,295	-		Psyr_4323	0.78	-0.1
5,176,295	-		Psyr_4323	0.78	-0.4
5,176,295	-		Psyr_4323	0.78	+0.0
5,176,295	-		Psyr_4323	0.78	+0.2
5,176,295	-		Psyr_4323	0.78	-1.5
5,176,295	-		Psyr_4323	0.78	+0.4
5,176,295	-		Psyr_4323	0.78	-1.3
5,176,295	-		Psyr_4323	0.78	-0.1
5,176,295	-		Psyr_4323	0.78	+2.2
5,176,295	-		Psyr_4323	0.78	+2.1
5,176,297	-		Psyr_4323	0.78	+1.6
5,176,344	+		Psyr_4323	0.84	-1.5
5,176,344	+		Psyr_4323	0.84	-0.4
5,176,345	-		Psyr_4323	0.84	+0.2
5,176,345	-		Psyr_4323	0.84	+0.2
5,176,389	+				-0.5
5,176,396	-				-0.4
5,176,407	-				-1.1
5,176,419	-				-0.1
5,176,422	-				+0.5
5,176,422	-				+0.7
5,176,422	-				+0.2
5,176,476	+				-0.8
5,176,538	+		Psyr_4324	0.10	+0.2
5,176,538	+		Psyr_4324	0.10	+1.8
5,176,539	-		Psyr_4324	0.11	-0.4
5,176,569	+		Psyr_4324	0.15	-0.3
5,176,569	+		Psyr_4324	0.15	-0.8
5,176,569	+		Psyr_4324	0.15	-0.3
5,176,569	+		Psyr_4324	0.15	-0.3
5,176,569	+		Psyr_4324	0.15	-0.7
5,176,569	+		Psyr_4324	0.15	-0.9
5,176,569	+		Psyr_4324	0.15	+0.7
5,176,570	-		Psyr_4324	0.15	+0.2
5,176,570	-		Psyr_4324	0.15	-1.4
5,176,570	-		Psyr_4324	0.15	+2.1
5,176,629	-		Psyr_4324	0.23	+1.6
5,176,652	+		Psyr_4324	0.27	+0.2
5,176,661	+		Psyr_4324	0.28	+0.5