Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3917

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
4,659,602	+				+0.1
4,659,692	-				+0.4
4,659,694	+				+0.4
4,659,694	+				-0.9
4,659,694	+				+0.0
4,659,694	+				+1.7
4,659,694	+				-0.1
4,659,694	+				+0.1
4,659,694	+				+0.1
4,659,694	+				-0.2
4,659,694	+				-0.2
4,659,694	+				+0.7
4,659,695	-				-0.2
4,659,695	-				-1.0
4,659,695	-				-0.2
4,659,695	-				+0.1
4,659,695	-				-0.1
4,659,695	-				-1.4
4,659,695	-				+2.1
4,659,695	-				-0.2
4,659,695	-				+0.9
4,659,695	-				-1.1
4,659,700	-				-2.2
4,659,700	-				+0.8
4,659,787	+		Psyr_3916	0.11	+0.6
4,659,788	-		Psyr_3916	0.11	+0.5
4,659,816	+		Psyr_3916	0.15	-2.2
4,659,816	+		Psyr_3916	0.15	+0.9
4,659,816	+		Psyr_3916	0.15	-2.2
4,659,816	+		Psyr_3916	0.15	+1.1
4,659,817	-		Psyr_3916	0.15	-0.2
4,659,817	-		Psyr_3916	0.15	-1.2
4,659,966	+		Psyr_3916	0.34	-1.2
4,659,967	-		Psyr_3916	0.34	+0.2
4,660,095	+		Psyr_3916	0.50	+0.1
4,660,095	+		Psyr_3916	0.50	+0.1
4,660,096	-		Psyr_3916	0.50	+1.7
4,660,133	+		Psyr_3916	0.55	-1.0
4,660,133	+		Psyr_3916	0.55	+0.1
4,660,133	+		Psyr_3916	0.55	+1.1
4,660,133	+		Psyr_3916	0.55	+0.3
4,660,134	-		Psyr_3916	0.55	+0.1
4,660,134	-		Psyr_3916	0.55	+0.1
4,660,157	+		Psyr_3916	0.58	+0.3
4,660,158	-		Psyr_3916	0.58	+0.5
4,660,158	-		Psyr_3916	0.58	+0.5
4,660,336	+		Psyr_3916	0.80	+0.1
4,660,337	-		Psyr_3916	0.80	+1.4
4,660,407	+		Psyr_3916	0.89	-2.5
4,660,446	+				-2.1
4,660,447	-				-0.1
4,660,549	+				+0.1
4,660,549	+				-1.9
4,660,549	+				-1.4
4,660,550	-				-1.2
4,660,550	-				-1.2
4,660,550	-				-0.7
4,660,687	+		Psyr_3917	0.16	+1.1
4,660,687	+		Psyr_3917	0.16	-2.1
4,660,688	-		Psyr_3917	0.16	-1.5
4,660,712	+		Psyr_3917	0.19	-2.4
4,660,805	+		Psyr_3917	0.29	-1.9
4,661,010	+		Psyr_3917	0.51	-1.5
4,661,010	+		Psyr_3917	0.51	-0.5
4,661,010	+		Psyr_3917	0.51	-0.7
4,661,010	+		Psyr_3917	0.51	-1.5
4,661,010	+		Psyr_3917	0.51	-1.3
4,661,010	+		Psyr_3917	0.51	-1.5
4,661,010	+		Psyr_3917	0.51	-1.3
4,661,010	+		Psyr_3917	0.51	-2.2
4,661,011	-		Psyr_3917	0.51	-2.1
4,661,011	-		Psyr_3917	0.51	-1.1
4,661,011	-		Psyr_3917	0.51	-1.2
4,661,011	-		Psyr_3917	0.51	-0.2
4,661,011	-		Psyr_3917	0.51	-0.7
4,661,011	-		Psyr_3917	0.51	-2.5
4,661,011	-		Psyr_3917	0.51	-0.7
4,661,011	-		Psyr_3917	0.51	-0.9
4,661,011	-		Psyr_3917	0.51	-1.5
4,661,011	-		Psyr_3917	0.51	-3.1
4,661,011	-		Psyr_3917	0.51	-0.9
4,661,011	-		Psyr_3917	0.51	-1.7
4,661,011	-		Psyr_3917	0.51	-0.9
4,661,011	-		Psyr_3917	0.51	-2.2
4,661,011	-		Psyr_3917	0.51	-2.5
4,661,024	+		Psyr_3917	0.53	-2.5
4,661,024	+		Psyr_3917	0.53	-1.7
4,661,025	-		Psyr_3917	0.53	-1.9
4,661,025	-		Psyr_3917	0.53	-1.0
4,661,028	+		Psyr_3917	0.53	-0.9
4,661,028	+		Psyr_3917	0.53	-2.9
4,661,028	+		Psyr_3917	0.53	+0.1
4,661,028	+		Psyr_3917	0.53	-0.5
4,661,028	+		Psyr_3917	0.53	-1.1
4,661,028	+		Psyr_3917	0.53	-1.5
4,661,028	+		Psyr_3917	0.53	-2.7
4,661,029	-		Psyr_3917	0.53	-1.2
4,661,029	-		Psyr_3917	0.53	+0.1
4,661,029	-		Psyr_3917	0.53	-0.2
4,661,029	-		Psyr_3917	0.53	-1.8
4,661,029	-		Psyr_3917	0.53	+0.4
4,661,029	-		Psyr_3917	0.53	-1.7
4,661,079	+		Psyr_3917	0.59	-0.3
4,661,079	+		Psyr_3917	0.59	+0.1
4,661,080	-		Psyr_3917	0.59	+0.1
4,661,122	-		Psyr_3917	0.64	-0.5
4,661,194	+		Psyr_3917	0.71	-0.9
4,661,194	+		Psyr_3917	0.71	-0.7
4,661,194	+		Psyr_3917	0.71	-1.7
4,661,195	-		Psyr_3917	0.71	-2.2
4,661,283	+		Psyr_3917	0.81	-0.5
4,661,283	+		Psyr_3917	0.81	-3.6
4,661,284	-		Psyr_3917	0.81	-0.9
4,661,298	+		Psyr_3917	0.83	+0.1
4,661,346	+		Psyr_3917	0.88	-1.3
4,661,346	+		Psyr_3917	0.88	-3.4
4,661,347	-		Psyr_3917	0.88	+0.1
4,661,347	-		Psyr_3917	0.88	-2.1
4,661,347	-		Psyr_3917	0.88	-2.6
4,661,382	+				+2.1
4,661,382	+				-1.2
4,661,382	+				-2.2
4,661,382	+				-2.5
4,661,382	+				-0.9
4,661,382	+				-3.0
4,661,382	+				-3.4
4,661,382	+				-0.9
4,661,382	+				-2.0
4,661,383	-				-0.3
4,661,383	-				-2.5
4,661,383	-				-2.1
4,661,383	-				-1.9
4,661,383	-				-1.9
4,661,383	-				-2.7
4,661,440	+				+0.7
4,661,440	+				-1.9
4,661,441	-				+0.1
4,661,441	-				-0.5
4,661,502	+				+1.1
4,661,503	-				+0.9
4,661,525	+				-0.9
4,661,526	-				-1.6
4,661,526	-				+1.9
4,661,651	+		Psyr_3918	0.37	+1.3
4,661,651	+		Psyr_3918	0.37	+0.7
4,661,651	+		Psyr_3918	0.37	-1.9
4,661,652	-		Psyr_3918	0.38	+0.4
4,661,652	-		Psyr_3918	0.38	+0.6
4,661,652	-		Psyr_3918	0.38	+0.2
4,661,652	-		Psyr_3918	0.38	+1.1
4,661,652	-		Psyr_3918	0.38	+0.1
4,661,652	-		Psyr_3918	0.38	-0.0
4,661,652	-		Psyr_3918	0.38	-0.9
4,661,652	-		Psyr_3918	0.38	-1.1
4,661,989	+				+1.1
4,661,990	-				+0.4
4,661,990	-				+0.9
4,662,022	+		Psyr_3919	0.11	-0.1
4,662,022	+		Psyr_3919	0.11	+1.9
4,662,023	-		Psyr_3919	0.11	-1.3
4,662,136	+		Psyr_3919	0.21	-0.3
4,662,136	+		Psyr_3919	0.21	-0.7
4,662,136	+		Psyr_3919	0.21	+1.1
4,662,136	+		Psyr_3919	0.21	+0.1
4,662,137	-		Psyr_3919	0.21	+0.7
4,662,137	-		Psyr_3919	0.21	+0.4
4,662,226	+		Psyr_3919	0.29	+1.7
4,662,227	-		Psyr_3919	0.30	+0.1
4,662,227	-		Psyr_3919	0.30	-0.5
4,662,244	+		Psyr_3919	0.31	-1.5
4,662,244	+		Psyr_3919	0.31	-0.3
4,662,244	+		Psyr_3919	0.31	-0.5
4,662,245	-		Psyr_3919	0.31	-0.2
4,662,245	-		Psyr_3919	0.31	-2.2