Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3561 and Psyr_3562 are separated by 48 nucleotides Psyr_3562 and Psyr_3563 overlap by 1 nucleotides
Psyr_3561: Psyr_3561 - succinylarginine dihydrolase, at 4,241,366 to 4,242,712
_3561
Psyr_3562: Psyr_3562 - succinylglutamic semialdehyde dehydrogenase, at 4,242,761 to 4,244,227
_3562
Psyr_3563: Psyr_3563 - arginine succinyltransferase, at 4,244,227 to 4,245,252
_3563
Position (kb)
4242
4243
4244
4245 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4241.787 kb on + strand, within Psyr_3561 at 4241.787 kb on + strand, within Psyr_3561 at 4241.922 kb on + strand, within Psyr_3561 at 4241.922 kb on + strand, within Psyr_3561 at 4241.969 kb on + strand, within Psyr_3561 at 4241.969 kb on + strand, within Psyr_3561 at 4242.006 kb on + strand, within Psyr_3561 at 4242.007 kb on - strand, within Psyr_3561 at 4242.007 kb on - strand, within Psyr_3561 at 4242.306 kb on + strand, within Psyr_3561 at 4242.306 kb on + strand, within Psyr_3561 at 4242.306 kb on + strand, within Psyr_3561 at 4242.310 kb on + strand, within Psyr_3561 at 4242.310 kb on + strand, within Psyr_3561 at 4242.310 kb on + strand, within Psyr_3561 at 4242.310 kb on + strand, within Psyr_3561 at 4242.311 kb on - strand, within Psyr_3561 at 4242.311 kb on - strand, within Psyr_3561 at 4242.311 kb on - strand, within Psyr_3561 at 4242.311 kb on - strand, within Psyr_3561 at 4242.311 kb on - strand, within Psyr_3561 at 4242.645 kb on + strand at 4242.661 kb on - strand at 4242.739 kb on - strand at 4242.740 kb on + strand at 4242.740 kb on + strand at 4242.741 kb on - strand at 4242.858 kb on + strand at 4243.437 kb on + strand, within Psyr_3562 at 4243.437 kb on + strand, within Psyr_3562 at 4243.437 kb on + strand, within Psyr_3562 at 4243.437 kb on + strand, within Psyr_3562 at 4243.437 kb on + strand, within Psyr_3562 at 4243.437 kb on + strand, within Psyr_3562 at 4243.438 kb on - strand, within Psyr_3562 at 4243.438 kb on - strand, within Psyr_3562 at 4243.438 kb on - strand, within Psyr_3562 at 4243.438 kb on - strand, within Psyr_3562 at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.214 kb on + strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.215 kb on - strand at 4244.222 kb on - strand at 4244.384 kb on + strand, within Psyr_3563 at 4244.384 kb on + strand, within Psyr_3563 at 4244.385 kb on - strand, within Psyr_3563 at 4244.385 kb on - strand, within Psyr_3563 at 4244.385 kb on - strand, within Psyr_3563 at 4244.513 kb on + strand, within Psyr_3563 at 4244.621 kb on + strand, within Psyr_3563 at 4244.622 kb on - strand, within Psyr_3563 at 4244.622 kb on - strand, within Psyr_3563 at 4244.948 kb on + strand, within Psyr_3563 at 4244.949 kb on - strand, within Psyr_3563 at 4244.999 kb on + strand, within Psyr_3563 at 4245.000 kb on - strand, within Psyr_3563 at 4245.084 kb on - strand, within Psyr_3563 at 4245.084 kb on - strand, within Psyr_3563 at 4245.137 kb on - strand, within Psyr_3563
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 4,241,787 + Psyr_3561 0.31 -0.2 4,241,787 + Psyr_3561 0.31 -0.6 4,241,922 + Psyr_3561 0.41 +1.8 4,241,922 + Psyr_3561 0.41 -1.8 4,241,969 + Psyr_3561 0.45 -0.7 4,241,969 + Psyr_3561 0.45 +0.8 4,242,006 + Psyr_3561 0.48 -1.0 4,242,007 - Psyr_3561 0.48 -0.6 4,242,007 - Psyr_3561 0.48 -0.6 4,242,306 + Psyr_3561 0.70 +0.5 4,242,306 + Psyr_3561 0.70 -0.8 4,242,306 + Psyr_3561 0.70 -1.2 4,242,310 + Psyr_3561 0.70 -0.8 4,242,310 + Psyr_3561 0.70 -1.2 4,242,310 + Psyr_3561 0.70 -1.6 4,242,310 + Psyr_3561 0.70 -1.5 4,242,311 - Psyr_3561 0.70 -0.8 4,242,311 - Psyr_3561 0.70 +1.8 4,242,311 - Psyr_3561 0.70 -0.2 4,242,311 - Psyr_3561 0.70 -1.1 4,242,311 - Psyr_3561 0.70 -1.0 4,242,645 + +0.7 4,242,661 - -2.0 4,242,739 - +0.1 4,242,740 + +0.3 4,242,740 + -0.9 4,242,741 - +0.0 4,242,858 + +1.1 4,243,437 + Psyr_3562 0.46 -1.0 4,243,437 + Psyr_3562 0.46 +0.7 4,243,437 + Psyr_3562 0.46 +0.6 4,243,437 + Psyr_3562 0.46 -1.7 4,243,437 + Psyr_3562 0.46 +0.0 4,243,437 + Psyr_3562 0.46 -1.3 4,243,438 - Psyr_3562 0.46 -1.0 4,243,438 - Psyr_3562 0.46 -1.7 4,243,438 - Psyr_3562 0.46 -2.0 4,243,438 - Psyr_3562 0.46 +0.0 4,244,214 + -1.0 4,244,214 + -0.4 4,244,214 + +0.2 4,244,214 + -1.6 4,244,214 + +1.0 4,244,214 + -0.6 4,244,214 + +0.0 4,244,215 - +0.4 4,244,215 - -1.5 4,244,215 - -0.6 4,244,215 - -0.4 4,244,215 - -0.1 4,244,215 - +0.8 4,244,215 - +0.9 4,244,215 - +1.7 4,244,222 - -0.6 4,244,384 + Psyr_3563 0.15 -3.6 4,244,384 + Psyr_3563 0.15 -3.8 4,244,385 - Psyr_3563 0.15 -1.0 4,244,385 - Psyr_3563 0.15 -3.0 4,244,385 - Psyr_3563 0.15 -1.0 4,244,513 + Psyr_3563 0.28 -1.6 4,244,621 + Psyr_3563 0.38 -1.6 4,244,622 - Psyr_3563 0.38 -0.7 4,244,622 - Psyr_3563 0.38 -2.0 4,244,948 + Psyr_3563 0.70 -1.0 4,244,949 - Psyr_3563 0.70 -2.2 4,244,999 + Psyr_3563 0.75 -1.0 4,245,000 - Psyr_3563 0.75 +0.0 4,245,084 - Psyr_3563 0.84 -1.6 4,245,084 - Psyr_3563 0.84 +0.3 4,245,137 - Psyr_3563 0.89 -3.3
Or see this region's nucleotide sequence