Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2576

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
2,990,714	+				+0.7
2,990,714	+				+1.7
2,990,715	-				+1.5
2,991,368	+				-0.8
2,991,369	-				-1.1
2,991,389	+				-0.6
2,991,474	+				-1.1
2,991,475	-				+1.7
2,991,487	+				-1.4
2,991,553	+				+1.6
2,991,593	+				-0.3
2,991,667	-				-1.1
2,991,796	-				-0.8
2,992,186	+				+1.7
2,992,282	+				+0.2
2,992,300	+				-0.7
2,992,300	+				-0.6
2,992,472	+				+0.5
2,992,472	+				-0.1
2,992,472	+				-0.0
2,992,472	+				+1.0
2,992,473	-				+1.7
2,992,473	-				-2.3
2,992,473	-				+0.7
2,992,495	+				+1.2
2,992,495	+				-1.1
2,992,802	-		Psyr_2576	0.12	+0.2
2,992,802	-		Psyr_2576	0.12	+0.7
2,993,034	-		Psyr_2576	0.14	-0.0
2,993,180	-		Psyr_2576	0.16	+2.1
2,993,227	+		Psyr_2576	0.16	+0.1
2,993,237	+		Psyr_2576	0.16	-0.6
2,993,238	-		Psyr_2576	0.16	+0.1
2,993,326	+		Psyr_2576	0.17	+0.7
2,993,326	+		Psyr_2576	0.17	+0.6
2,993,327	-		Psyr_2576	0.17	+0.7
2,993,368	+		Psyr_2576	0.18	-1.8
2,993,368	+		Psyr_2576	0.18	+1.1
2,993,505	-		Psyr_2576	0.19	-0.7
2,993,533	+		Psyr_2576	0.19	-0.7
2,993,533	+		Psyr_2576	0.19	+0.1
2,993,542	+		Psyr_2576	0.19	+0.7
2,993,652	+		Psyr_2576	0.21	+1.3
2,993,653	-		Psyr_2576	0.21	+0.3
2,993,653	-		Psyr_2576	0.21	+1.4
2,993,653	-		Psyr_2576	0.21	-1.1
2,993,653	-		Psyr_2576	0.21	-0.5
2,993,837	-		Psyr_2576	0.22	+0.2
2,993,928	+		Psyr_2576	0.23	-1.0
2,993,929	-				-1.3
2,993,944	+		Psyr_2576	0.24	-1.6
2,993,944	+		Psyr_2576	0.24	-1.4
2,993,944	+		Psyr_2576	0.24	+1.6
2,993,945	-		Psyr_2576	0.24	+0.7
2,994,040	+		Psyr_2576	0.25	-0.5
2,994,041	-				-1.3
2,994,041	-		Psyr_2576	0.25	+0.1
2,994,094	+		Psyr_2576	0.25	+0.3
2,994,094	+		Psyr_2576	0.25	-0.3
2,994,095	-		Psyr_2576	0.25	-0.7
2,994,199	+		Psyr_2576	0.26	-0.5
2,994,247	+		Psyr_2576	0.27	+1.7
2,994,452	-		Psyr_2576	0.29	-0.3
2,994,547	+		Psyr_2576	0.30	+0.6
2,994,566	-		Psyr_2576	0.30	-0.3
2,995,051	+		Psyr_2576	0.35	+0.7
2,995,052	-		Psyr_2576	0.35	+0.7
2,995,052	-		Psyr_2576	0.35	-0.3
2,995,450	+		Psyr_2576	0.39	-2.8
2,995,463	+		Psyr_2576	0.40	+0.1
2,995,464	-		Psyr_2576	0.40	-0.3
2,995,680	-				+1.1
2,995,701	-		Psyr_2576	0.42	-2.7
2,995,721	+		Psyr_2576	0.42	-0.1
2,995,722	-		Psyr_2576	0.42	-0.8
2,995,794	+		Psyr_2576	0.43	+1.7
2,996,036	+		Psyr_2576	0.46	+0.8
2,996,036	+		Psyr_2576	0.46	-0.0
2,996,036	+		Psyr_2576	0.46	-1.0
2,996,037	-		Psyr_2576	0.46	-0.8
2,996,037	-		Psyr_2576	0.46	-0.3
2,996,037	-		Psyr_2576	0.46	-2.1
2,996,037	-		Psyr_2576	0.46	-2.4
2,996,037	-		Psyr_2576	0.46	-0.9
2,996,047	+		Psyr_2576	0.46	+2.1
2,996,097	+		Psyr_2576	0.46	+1.2
2,996,097	+		Psyr_2576	0.46	+0.3
2,996,363	+		Psyr_2576	0.49	+0.1
2,996,363	+		Psyr_2576	0.49	+0.2
2,996,363	+		Psyr_2576	0.49	-1.5
2,996,363	+		Psyr_2576	0.49	+0.5
2,996,363	+		Psyr_2576	0.49	-0.1
2,996,364	-		Psyr_2576	0.49	+0.7
2,996,364	-		Psyr_2576	0.49	+0.1
2,996,371	+		Psyr_2576	0.49	+0.2
2,996,372	-		Psyr_2576	0.49	+0.0
2,996,518	+		Psyr_2576	0.51	-0.3
2,996,561	-		Psyr_2576	0.51	+0.1
2,996,728	+		Psyr_2576	0.53	-0.6
2,996,729	-		Psyr_2576	0.53	-1.0
2,996,729	-		Psyr_2576	0.53	+0.7
2,996,729	-		Psyr_2576	0.53	-0.8
2,997,227	-		Psyr_2576	0.58	+0.5
2,997,227	-		Psyr_2576	0.58	+1.3
2,997,227	-		Psyr_2576	0.58	+0.3
2,997,227	-		Psyr_2576	0.58	-1.8
2,997,227	-				+0.0
2,997,280	+		Psyr_2576	0.59	-1.3
2,997,281	-				-0.3
2,997,281	-		Psyr_2576	0.59	-0.3
2,997,281	-		Psyr_2576	0.59	+0.2
2,997,433	+		Psyr_2576	0.60	-0.1
2,997,920	+		Psyr_2576	0.65	+0.3
2,997,920	+		Psyr_2576	0.65	+1.9
2,998,024	+		Psyr_2576	0.67	-0.3
2,998,024	+		Psyr_2576	0.67	-1.8
2,998,024	+		Psyr_2576	0.67	+0.6
2,998,024	+		Psyr_2576	0.67	+0.6
2,998,024	+		Psyr_2576	0.67	-1.3
2,998,024	+		Psyr_2576	0.67	-2.3
2,998,024	+		Psyr_2576	0.67	+0.6
2,998,025	-		Psyr_2576	0.67	-0.3
2,998,025	-		Psyr_2576	0.67	-1.0
2,998,025	-		Psyr_2576	0.67	-0.1
2,998,600	+		Psyr_2576	0.73	-1.1
2,998,600	+		Psyr_2576	0.73	-2.6
2,998,600	+		Psyr_2576	0.73	+0.4
2,998,600	+		Psyr_2576	0.73	+1.3
2,998,601	-		Psyr_2576	0.73	+1.4
2,998,601	-		Psyr_2576	0.73	+0.2
2,998,648	+		Psyr_2576	0.73	-0.9
2,998,671	+		Psyr_2576	0.73	+0.0
2,998,673	+		Psyr_2576	0.73	+1.3
2,998,673	+		Psyr_2576	0.73	+0.7
2,998,673	+		Psyr_2576	0.73	+1.2
2,998,673	+		Psyr_2576	0.73	-0.1
2,998,673	+		Psyr_2576	0.73	-1.6
2,998,674	-		Psyr_2576	0.73	+0.2
2,998,674	-		Psyr_2576	0.73	+1.7
2,998,674	-		Psyr_2576	0.73	-0.8
2,998,674	-		Psyr_2576	0.73	+1.3
2,999,289	+		Psyr_2576	0.80	+2.7
2,999,290	-		Psyr_2576	0.80	+1.7
2,999,290	-		Psyr_2576	0.80	-2.8
2,999,299	+		Psyr_2576	0.80	+0.7
2,999,480	+		Psyr_2576	0.82	-0.6
2,999,480	+		Psyr_2576	0.82	+2.6
2,999,481	-		Psyr_2576	0.82	-0.6
2,999,677	+				-1.3
2,999,677	+		Psyr_2576	0.84	+0.3
2,999,719	+		Psyr_2576	0.84	+2.6
2,999,719	+		Psyr_2576	0.84	-0.5
2,999,720	-		Psyr_2576	0.84	+0.0
2,999,720	-		Psyr_2576	0.84	+1.7
2,999,767	-		Psyr_2576	0.85	+0.6
2,999,884	+		Psyr_2576	0.86	-0.5
2,999,885	-		Psyr_2576	0.86	-0.5
2,999,885	-		Psyr_2576	0.86	-0.6
2,999,893	+		Psyr_2576	0.86	-0.5
2,999,893	+		Psyr_2576	0.86	+1.2
2,999,943	+		Psyr_2576	0.87	-0.3
3,000,316	+				-0.6
3,000,317	-				+0.5
3,000,427	+				+1.3
3,000,427	+				+0.0
3,000,428	-				+0.6
3,000,428	-				-0.3
3,000,428	-				-0.3
3,000,428	-				-0.3
3,000,428	-				-0.8
3,000,428	-				-0.3
3,000,512	-				+0.2
3,000,669	-				-0.3
3,000,687	+				-0.0
3,000,781	+				-0.3
3,000,844	+				-0.3
3,000,845	-				-0.3
3,001,149	+				+0.5
3,001,150	-				+1.2
3,001,150	-				-0.3
3,001,599	+				+1.7
3,001,600	-				-0.3
3,001,706	-				+0.1
3,001,969	+				-0.3
3,001,989	+				-0.3
3,001,989	+				+1.2
3,001,989	+				+0.1
3,001,990	-				+0.2
3,001,990	-				+0.0
3,001,990	-				-0.7
3,001,990	-				+0.6