Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0937

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
1,071,900	+		Psyr_0936	0.46	-1.4
1,071,900	+		Psyr_0936	0.46	-2.4
1,071,900	+		Psyr_0936	0.46	-1.4
1,071,901	-		Psyr_0936	0.46	-2.6
1,071,903	+		Psyr_0936	0.46	-2.1
1,071,903	+		Psyr_0936	0.46	-1.8
1,071,903	+		Psyr_0936	0.46	-1.8
1,071,903	+		Psyr_0936	0.46	-3.6
1,071,904	-		Psyr_0936	0.46	-1.3
1,071,904	-		Psyr_0936	0.46	-1.6
1,071,904	-		Psyr_0936	0.46	+0.2
1,071,931	+		Psyr_0936	0.49	-1.4
1,071,932	-		Psyr_0936	0.49	-1.4
1,071,932	-		Psyr_0936	0.49	-1.4
1,071,932	-		Psyr_0936	0.49	-1.8
1,071,979	+		Psyr_0936	0.53	-0.8
1,071,979	+		Psyr_0936	0.53	-4.0
1,071,979	+		Psyr_0936	0.53	-2.4
1,071,979	+		Psyr_0936	0.53	-2.8
1,071,980	-		Psyr_0936	0.53	-3.6
1,071,980	-		Psyr_0936	0.53	-2.8
1,072,041	-		Psyr_0936	0.58	-2.3
1,072,060	+		Psyr_0936	0.60	-2.7
1,072,094	+		Psyr_0936	0.63	-4.4
1,072,094	+		Psyr_0936	0.63	-3.1
1,072,158	+		Psyr_0936	0.68	-2.4
1,072,158	+		Psyr_0936	0.68	-3.3
1,072,158	+		Psyr_0936	0.68	-0.8
1,072,158	+		Psyr_0936	0.68	-2.6
1,072,158	+		Psyr_0936	0.68	-1.4
1,072,158	+		Psyr_0936	0.68	-0.8
1,072,158	+		Psyr_0936	0.68	-1.4
1,072,159	-		Psyr_0936	0.68	-2.1
1,072,159	-		Psyr_0936	0.68	-1.3
1,072,159	-		Psyr_0936	0.68	-3.6
1,072,159	-		Psyr_0936	0.68	-3.6
1,072,159	-		Psyr_0936	0.68	+1.8
1,072,159	-		Psyr_0936	0.68	-1.4
1,072,161	+		Psyr_0936	0.69	-3.7
1,072,162	-		Psyr_0936	0.69	-3.7
1,072,197	+		Psyr_0936	0.72	-3.5
1,072,198	-		Psyr_0936	0.72	-2.6
1,072,198	-		Psyr_0936	0.72	-0.8
1,072,288	-		Psyr_0936	0.80	-1.4
1,072,313	+		Psyr_0936	0.82	-0.3
1,072,313	+		Psyr_0936	0.82	+1.5
1,072,314	-		Psyr_0936	0.82	-3.1
1,072,381	+		Psyr_0936	0.88	-3.4
1,072,447	+				-3.9
1,072,447	+				-3.3
1,072,447	+				+0.2
1,072,447	+				-3.0
1,072,447	+				-2.8
1,072,447	+				-0.8
1,072,447	+				-4.3
1,072,447	+				-4.0
1,072,448	-				-2.6
1,072,448	-				-1.6
1,072,448	-				-1.8
1,072,448	-				-1.4
1,072,448	-				-1.1
1,072,448	-				-2.0
1,072,448	-				-2.6
1,072,448	-				-3.5
1,072,448	-				+0.2
1,072,448	-				-3.1
1,072,448	-				+0.2
1,072,449	+				-2.6
1,072,449	+				-2.1
1,072,449	+				-0.9
1,072,449	+				-1.4
1,072,449	+				-4.3
1,072,449	+				-1.6
1,072,449	+				-1.8
1,072,449	+				-3.9
1,072,449	+				-0.8
1,072,449	+				-2.1
1,072,449	+				-3.7
1,072,449	+				-1.8
1,072,450	-				+0.2
1,072,450	-				-1.1
1,072,450	-				+0.2
1,072,450	-				-0.4
1,072,450	-				+0.8
1,072,450	-				-1.8
1,072,450	-				-2.6
1,072,450	-				-1.1
1,072,450	-				-1.8
1,072,450	-				-1.9
1,072,450	-				-2.8
1,072,450	-				-2.1
1,072,450	-				-1.4
1,072,499	+				-2.6
1,072,499	+				-3.0
1,072,500	-				-1.4
1,072,500	-				+0.2
1,072,500	-				-2.4
1,072,500	-				-0.8
1,072,500	-				-1.8
1,072,500	-				-2.1
1,072,512	+				-3.1
1,072,512	+				-0.8
1,072,512	+				+0.2
1,072,512	+				-2.6
1,072,512	+				-3.0
1,072,512	+				-2.9
1,072,512	+				+0.2
1,072,512	+				-1.8
1,072,512	+				-4.0
1,072,512	+				-1.4
1,072,512	+				-0.9
1,072,512	+				+0.2
1,072,512	+				-0.4
1,072,512	+				-1.1
1,072,512	+				-2.8
1,072,512	+				-2.6
1,072,512	+				-0.8
1,072,512	+				-2.4
1,072,512	+				-2.9
1,072,513	-				-2.6
1,072,513	-				-2.3
1,072,513	-				-3.8
1,072,513	-				-3.0
1,072,513	-				-1.8
1,072,513	-				+1.2
1,072,513	-				-0.4
1,072,513	-				-0.8
1,072,513	-				-1.4
1,072,513	-				-4.6
1,072,513	-				-2.6
1,072,514	+				-3.3
1,072,548	+				-2.1
1,072,548	+				-1.4
1,072,548	+				-4.3
1,072,548	+				-2.4
1,072,548	+				-1.1
1,072,548	+				-2.7
1,072,548	+				+2.4
1,072,549	-				+0.4
1,072,549	-				+0.0
1,072,549	-				-0.5
1,072,549	-				-0.3
1,072,549	-				+2.8
1,072,549	-				-0.2
1,072,549	-				+0.0
1,072,568	+				-1.8
1,072,569	-				-0.3
1,072,569	-				+1.1
1,072,581	+				+1.2
1,072,581	+				+1.0
1,072,581	+				-0.2
1,072,581	+				-0.2
1,072,582	-				+2.5
1,072,582	-				+1.8
1,072,584	+				-1.4
1,072,584	+				-0.5
1,072,585	-				-1.4
1,072,585	-				-0.3
1,072,638	+				-2.6
1,072,639	-				-0.8
1,072,692	+				+1.2
1,072,702	+				-0.3
1,072,703	-				+0.6
1,072,708	+				+2.0
1,072,708	+				+0.2
1,072,709	-				-1.5
1,072,709	-				-1.4
1,072,713	+				-1.8
1,072,713	+				-1.1
1,072,714	-				-1.0
1,072,714	-				+0.3
1,072,714	-				+1.0
1,072,714	-				-0.2
1,072,732	+				-2.1
1,072,732	+				-1.8
1,072,733	-				-1.1
1,072,733	-				-2.1
1,072,796	+				-2.4
1,072,796	+				-1.8
1,072,796	+				-1.9
1,072,796	+				-2.1
1,072,797	-				-0.8
1,072,797	-				-1.9
1,072,797	-				-1.4
1,072,810	+				+0.6
1,072,810	+				-1.6
1,073,005	+		Psyr_0937	0.15	-1.4
1,073,005	+		Psyr_0937	0.15	-0.4
1,073,005	+		Psyr_0937	0.15	-1.4
1,073,005	+		Psyr_0937	0.15	+0.2
1,073,005	+		Psyr_0937	0.15	-0.8
1,073,005	+		Psyr_0937	0.15	-1.4
1,073,006	-		Psyr_0937	0.15	-2.1
1,073,006	-		Psyr_0937	0.15	-2.1
1,073,006	-		Psyr_0937	0.15	-1.8
1,073,006	-		Psyr_0937	0.15	-2.4
1,073,006	-		Psyr_0937	0.15	-1.4
1,073,006	-		Psyr_0937	0.15	-2.1
1,073,006	-		Psyr_0937	0.15	-1.4
1,073,128	+		Psyr_0937	0.23	-0.4
1,073,147	+		Psyr_0937	0.25	-0.2
1,073,262	+		Psyr_0937	0.33	-2.8
1,073,349	+		Psyr_0937	0.39	-3.0
1,073,349	+		Psyr_0937	0.39	-2.0
1,073,350	-		Psyr_0937	0.39	-2.1
1,073,350	-		Psyr_0937	0.39	-1.4
1,073,350	-		Psyr_0937	0.39	-2.1
1,073,367	+		Psyr_0937	0.40	-1.1
1,073,367	+		Psyr_0937	0.40	-1.9
1,073,367	+		Psyr_0937	0.40	-2.1
1,073,367	+		Psyr_0937	0.40	-0.2
1,073,367	+		Psyr_0937	0.40	-1.8
1,073,384	+		Psyr_0937	0.41	-1.0
1,073,385	-		Psyr_0937	0.41	-1.8
1,073,443	+		Psyr_0937	0.46	-2.4
1,073,443	+		Psyr_0937	0.46	-1.4
1,073,443	+		Psyr_0937	0.46	-2.3
1,073,443	+		Psyr_0937	0.46	+0.8
1,073,443	+		Psyr_0937	0.46	-0.8
1,073,443	+		Psyr_0937	0.46	-2.6
1,073,443	+		Psyr_0937	0.46	-1.4
1,073,443	+		Psyr_0937	0.46	-3.2
1,073,444	-		Psyr_0937	0.46	-2.4
1,073,444	-		Psyr_0937	0.46	-0.8
1,073,444	-		Psyr_0937	0.46	-0.3
1,073,444	-		Psyr_0937	0.46	-2.1
1,073,444	-		Psyr_0937	0.46	-0.8
1,073,444	-		Psyr_0937	0.46	-1.8
1,073,444	-		Psyr_0937	0.46	-0.8
1,073,444	-		Psyr_0937	0.46	-0.8
1,073,490	+		Psyr_0937	0.49	-3.0
1,073,490	+		Psyr_0937	0.49	-0.4
1,073,490	+		Psyr_0937	0.49	-1.1
1,073,490	+		Psyr_0937	0.49	-2.1
1,073,490	+		Psyr_0937	0.49	-2.4
1,073,490	+		Psyr_0937	0.49	-2.1
1,073,490	+		Psyr_0937	0.49	-2.4
1,073,490	+		Psyr_0937	0.49	-2.1
1,073,491	-		Psyr_0937	0.49	-0.8
1,073,491	-		Psyr_0937	0.49	+0.2
1,073,491	-		Psyr_0937	0.49	-2.4
1,073,491	-		Psyr_0937	0.49	-1.7
1,073,491	-		Psyr_0937	0.49	-1.4
1,073,491	-		Psyr_0937	0.49	-1.1
1,073,585	-		Psyr_0937	0.56	-1.4
1,073,585	-		Psyr_0937	0.56	-2.1
1,073,585	-		Psyr_0937	0.56	-1.1
1,073,898	+		Psyr_0937	0.78	-0.8
1,073,899	-		Psyr_0937	0.78	-3.4
1,073,947	+		Psyr_0937	0.81	-1.4
1,074,010	+		Psyr_0937	0.85	+0.2
1,074,011	-		Psyr_0937	0.86	-2.1
1,074,011	-		Psyr_0937	0.86	-0.8
1,074,011	-		Psyr_0937	0.86	-2.6
1,074,030	-		Psyr_0937	0.87	-1.8
1,074,075	+				-3.1
1,074,075	+				-1.8
1,074,075	+				-2.8
1,074,075	+				+0.2
1,074,075	+				-1.5
1,074,075	+				+1.0
1,074,075	+				-2.1
1,074,075	+				-2.4
1,074,075	+				-2.4
1,074,076	-				-2.6
1,074,076	-				-2.1
1,074,076	-				+0.2
1,074,076	-				-1.4
1,074,076	-				-3.0
1,074,076	-				-2.4
1,074,076	-				-2.0
1,074,076	-				-1.8
1,074,076	-				-1.8
1,074,076	-				-0.4
1,074,076	-				-1.4
1,074,076	-				-2.4
1,074,076	-				-0.5
1,074,076	-				-3.4
1,074,156	+				-2.1
1,074,156	+				-1.6
1,074,157	-				-0.4
1,074,213	+				-0.1
1,074,213	+				+0.3
1,074,213	+				+1.4
1,074,213	+				-0.2
1,074,213	+				+0.1
1,074,213	+				-0.8
1,074,214	-				+0.6
1,074,214	-				-1.4
1,074,214	-				-0.8
1,074,214	-				+0.6
1,074,214	-				+1.2
1,074,214	-				+0.2
1,074,214	-				-2.6
1,074,214	-				+0.7
1,074,330	+				-0.6
1,074,330	+				-0.2
1,074,331	-				+0.5
1,074,331	-				+0.4
1,074,333	+				-0.5
1,074,333	+				-0.9
1,074,334	-				-1.2
1,074,350	+				-0.0
1,074,350	+				+0.3
1,074,350	+				+0.8
1,074,351	-				-0.8
1,074,351	-				+0.4
1,074,351	-				-1.4
1,074,351	-				-1.2
1,074,351	-				-0.7
1,074,364	+				-0.2
1,074,418	+				+1.3
1,074,447	+				+3.4
1,074,447	+				-0.4
1,074,447	+				+0.6
1,074,447	+				-1.3
1,074,447	+				-1.1
1,074,447	+				+0.6
1,074,448	-				+0.9
1,074,448	-				-0.3
1,074,448	-				+0.9
1,074,448	-				+0.9
1,074,448	-				+0.2
1,074,455	+				+1.0
1,074,457	+				+0.1
1,074,457	+				+0.0
1,074,457	+				+0.2
1,074,458	-				+1.6
1,074,458	-				-2.1
1,074,616	+		Psyr_0938	0.14	+2.2
1,074,642	+		Psyr_0938	0.16	+0.3
1,074,642	+		Psyr_0938	0.16	-0.7
1,074,642	+		Psyr_0938	0.16	+0.6
1,074,642	+		Psyr_0938	0.16	-0.1
1,074,642	+		Psyr_0938	0.16	-0.1
1,074,642	+		Psyr_0938	0.16	+0.9
1,074,643	-		Psyr_0938	0.16	+1.2
1,074,643	-		Psyr_0938	0.16	-1.8
1,074,697	+		Psyr_0938	0.20	+1.5
1,074,697	+		Psyr_0938	0.20	-1.4
1,074,697	+		Psyr_0938	0.20	+0.2
1,074,697	+		Psyr_0938	0.20	+0.6
1,074,697	+		Psyr_0938	0.20	-1.2
1,074,698	-		Psyr_0938	0.20	-0.6
1,074,698	-		Psyr_0938	0.20	-0.0
1,074,698	-		Psyr_0938	0.20	+1.5
1,074,698	-		Psyr_0938	0.20	+0.2
1,074,761	+		Psyr_0938	0.26	+0.9
1,074,761	+		Psyr_0938	0.26	-0.1
1,074,780	-		Psyr_0938	0.27	-0.1
1,074,783	+		Psyr_0938	0.27	+2.8
1,074,783	+		Psyr_0938	0.27	-0.6
1,074,784	-		Psyr_0938	0.28	+0.6
1,074,784	-		Psyr_0938	0.28	-1.4
1,074,789	+		Psyr_0938	0.28	-0.7
1,074,833	+		Psyr_0938	0.32	+1.0
1,074,893	-		Psyr_0938	0.37	+1.2
1,074,893	-		Psyr_0938	0.37	-0.5
1,074,924	+		Psyr_0938	0.39	-0.3
1,074,933	+		Psyr_0938	0.40	-0.3
1,074,975	-		Psyr_0938	0.43	+1.0
1,074,991	+		Psyr_0938	0.45	-0.3
1,074,991	+		Psyr_0938	0.45	-1.8
1,074,991	+		Psyr_0938	0.45	-1.1
1,074,992	-		Psyr_0938	0.45	-1.8
1,074,992	-		Psyr_0938	0.45	-0.8
1,075,036	-		Psyr_0938	0.48	+0.7
1,075,051	+		Psyr_0938	0.50	-0.4
1,075,166	-		Psyr_0938	0.59	-0.4
1,075,176	+		Psyr_0938	0.60	-0.9
1,075,176	+		Psyr_0938	0.60	-1.3
1,075,176	+		Psyr_0938	0.60	-0.7
1,075,176	+		Psyr_0938	0.60	+0.6
1,075,176	+		Psyr_0938	0.60	-0.4