Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0665

Experiment: Citric Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0664 and Psyr_0665 are separated by 4 nucleotidesPsyr_0665 and Psyr_0666 overlap by 4 nucleotidesPsyr_0666 and Psyr_0667 are separated by 0 nucleotides Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599 _0664 Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572 _0665 Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558 _0666 Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479 _0667 Position (kb) 753 754 755Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.632 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.639 kb on - strandat 752.650 kb on - strandat 752.679 kb on - strandat 752.679 kb on - strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 753.021 kb on - strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.102 kb on - strand, within Psyr_0664at 753.318 kb on + strand, within Psyr_0664at 753.594 kb on - strandat 753.594 kb on - strandat 753.765 kb on - strand, within Psyr_0665at 753.894 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.572 kb on + strandat 754.588 kb on - strandat 754.842 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.408 kb on - strand, within Psyr_0666at 755.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
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752,607 + -0.5
752,607 + -0.1
752,607 + +0.3
752,607 + -0.7
752,607 + -1.2
752,608 - +0.5
752,608 - +0.9
752,608 - +0.4
752,632 + -0.2
752,638 + -0.5
752,638 + +1.6
752,638 + -0.3
752,638 + -0.7
752,639 - +0.7
752,650 - +0.8
752,679 - -1.5
752,679 - -0.2
752,761 + +0.3
752,761 + +0.3
752,761 + +0.1
752,761 + -0.6
752,762 - +0.1
752,762 - +0.4
752,762 - +1.0
752,762 - -0.1
752,762 - +0.4
752,886 + +0.3
752,886 + -2.3
752,886 + -2.5
752,886 + -3.2
752,886 + -4.0
752,887 - -3.1
752,887 - -0.1
752,887 - -1.5
752,887 - -2.7
753,021 - Psyr_0664 0.27 -4.1
753,094 + Psyr_0664 0.36 -2.1
753,094 + Psyr_0664 0.36 -0.3
753,095 - Psyr_0664 0.36 -2.5
753,095 - Psyr_0664 0.36 -3.1
753,095 - Psyr_0664 0.36 -3.1
753,095 - Psyr_0664 0.36 -2.3
753,095 - Psyr_0664 0.36 -1.9
753,095 - Psyr_0664 0.36 -2.2
753,095 - Psyr_0664 0.36 -1.1
753,102 - Psyr_0664 0.37 -1.6
753,318 + Psyr_0664 0.64 -3.3
753,594 - -1.3
753,594 - -1.3
753,765 - Psyr_0665 0.17 -2.0
753,894 + Psyr_0665 0.30 -2.6
754,181 + Psyr_0665 0.60 -0.5
754,181 + Psyr_0665 0.60 -1.5
754,181 + Psyr_0665 0.60 -2.1
754,181 + Psyr_0665 0.60 -2.5
754,181 + Psyr_0665 0.60 -1.3
754,181 + Psyr_0665 0.60 -3.0
754,181 + Psyr_0665 0.60 -1.7
754,181 + Psyr_0665 0.60 -2.1
754,181 + Psyr_0665 0.60 -2.5
754,181 + Psyr_0665 0.60 -2.5
754,182 - Psyr_0665 0.60 -3.8
754,182 - Psyr_0665 0.60 -1.7
754,182 - Psyr_0665 0.60 -1.3
754,182 - Psyr_0665 0.60 -1.7
754,182 - Psyr_0665 0.60 -1.5
754,182 - Psyr_0665 0.60 +0.3
754,182 - Psyr_0665 0.60 -3.1
754,182 - Psyr_0665 0.60 -1.3
754,182 - Psyr_0665 0.60 -1.3
754,182 - Psyr_0665 0.60 -2.1
754,182 - Psyr_0665 0.60 -1.8
754,182 - Psyr_0665 0.60 -3.5
754,572 + +0.3
754,588 - +0.6
754,842 + Psyr_0666 0.28 -1.6
755,407 + Psyr_0666 0.85 -1.7
755,407 + Psyr_0666 0.85 -3.4
755,407 + Psyr_0666 0.85 -2.5
755,407 + Psyr_0666 0.85 -3.5
755,407 + Psyr_0666 0.85 -0.7
755,407 + Psyr_0666 0.85 -3.3
755,408 - Psyr_0666 0.85 -1.5
755,561 - -2.5

Or see this region's nucleotide sequence