Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0196 and Psyr_0197 are separated by 397 nucleotides Psyr_0197 and Psyr_0198 are separated by 69 nucleotides
Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947
_0196
Psyr_0197: Psyr_0197 - Mg chelatase-related protein, at 210,345 to 211,838
_0197
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Position (kb) 210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 209.422 kb on - strand, within Psyr_0196 at 209.655 kb on + strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.685 kb on + strand at 209.685 kb on + strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.707 kb on - strand at 209.723 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.989 kb on + strand at 209.990 kb on - strand at 209.990 kb on - strand at 210.012 kb on - strand at 210.047 kb on + strand at 210.048 kb on - strand at 210.093 kb on - strand at 210.152 kb on + strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.155 kb on - strand at 210.155 kb on - strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.235 kb on + strand at 210.235 kb on + strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.271 kb on - strand at 210.302 kb on + strand at 210.302 kb on + strand at 210.303 kb on - strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.330 kb on - strand at 210.365 kb on + strand at 210.917 kb on + strand, within Psyr_0197 at 210.980 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.286 kb on - strand, within Psyr_0197 at 211.311 kb on - strand, within Psyr_0197 at 211.395 kb on + strand, within Psyr_0197 at 211.653 kb on + strand, within Psyr_0197 at 211.899 kb on + strand at 211.899 kb on + strand at 211.900 kb on - strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.988 kb on + strand at 211.988 kb on + strand at 211.989 kb on - strand at 212.044 kb on + strand, within Psyr_0198 at 212.044 kb on + strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.167 kb on + strand, within Psyr_0198 at 212.168 kb on - strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.633 kb on - strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 209,422 - Psyr_0196 0.84 -0.1 209,655 + +0.3 209,656 - -0.2 209,656 - -0.3 209,656 - +0.3 209,656 - -0.1 209,656 - +0.8 209,656 - +0.4 209,656 - -0.2 209,656 - -0.3 209,656 - -0.2 209,656 - -1.4 209,685 + -1.5 209,685 + -0.3 209,686 - +0.9 209,686 - -0.6 209,686 - -1.2 209,686 - -1.4 209,691 + +1.5 209,691 + -1.3 209,691 + +0.7 209,691 + +0.7 209,691 + +0.3 209,691 + +1.5 209,691 + -1.2 209,691 + -0.3 209,691 + +0.2 209,691 + -0.2 209,691 + +0.0 209,691 + -1.2 209,691 + +1.4 209,691 + +1.0 209,691 + +1.0 209,691 + +0.7 209,691 + -0.6 209,691 + -1.1 209,691 + +0.4 209,691 + +1.2 209,691 + +0.4 209,691 + +1.7 209,691 + -0.6 209,691 + +0.1 209,691 + -0.5 209,691 + +0.4 209,691 + -0.6 209,691 + +0.1 209,691 + -1.5 209,691 + -1.6 209,691 + +0.1 209,691 + -0.1 209,691 + +0.9 209,691 + -1.4 209,691 + -0.5 209,691 + -1.2 209,691 + +0.6 209,691 + -0.1 209,691 + -1.1 209,691 + -1.6 209,691 + -0.4 209,691 + +0.3 209,691 + -0.3 209,691 + -0.5 209,691 + -0.2 209,691 + +0.3 209,698 - -0.4 209,698 - +0.0 209,698 - +1.2 209,706 + -1.3 209,706 + -1.4 209,706 + -0.3 209,706 + -1.2 209,706 + -2.9 209,706 + +1.0 209,707 - +0.2 209,723 - -0.5 209,725 - -0.2 209,725 - +0.7 209,725 - -0.7 209,725 - +2.0 209,725 - -1.6 209,725 - -0.1 209,989 + -0.2 209,990 - -0.3 209,990 - +0.6 210,012 - +0.8 210,047 + -0.6 210,048 - +0.7 210,093 - +1.4 210,152 + +1.1 210,152 + -0.2 210,153 - -0.6 210,153 - -0.1 210,153 - +0.9 210,154 + -1.2 210,154 + -0.3 210,154 + +0.4 210,155 - -0.2 210,155 - -0.2 210,207 + +0.2 210,207 + -0.2 210,207 + +0.1 210,207 + +0.4 210,207 + +0.3 210,207 + -1.0 210,208 - +0.1 210,208 - -0.6 210,208 - +0.2 210,235 + +0.9 210,235 + -0.4 210,236 - -1.2 210,236 - +0.2 210,236 - +0.7 210,271 - +1.4 210,302 + -0.0 210,302 + +0.8 210,303 - +0.4 210,329 + +1.0 210,329 + +0.4 210,329 + -0.9 210,330 - +0.2 210,365 + +1.4 210,917 + Psyr_0197 0.38 -0.6 210,980 + Psyr_0197 0.43 -0.4 211,237 + Psyr_0197 0.60 +0.3 211,237 + Psyr_0197 0.60 -1.8 211,285 + Psyr_0197 0.63 -0.7 211,285 + Psyr_0197 0.63 +1.0 211,285 + Psyr_0197 0.63 -1.2 211,285 + Psyr_0197 0.63 +0.3 211,285 + Psyr_0197 0.63 -1.1 211,285 + Psyr_0197 0.63 +0.3 211,285 + Psyr_0197 0.63 -0.6 211,286 - Psyr_0197 0.63 +0.4 211,311 - Psyr_0197 0.65 -0.5 211,395 + Psyr_0197 0.70 +0.4 211,653 + Psyr_0197 0.88 -1.4 211,899 + -0.6 211,899 + -3.4 211,900 - -2.6 211,909 + -0.4 211,909 + -3.1 211,909 + +0.8 211,909 + -0.8 211,909 + -3.1 211,909 + -1.6 211,909 + -2.1 211,909 + -2.3 211,909 + -1.2 211,909 + -0.6 211,909 + -0.9 211,909 + -1.2 211,909 + -2.3 211,910 - -1.2 211,910 - -0.9 211,910 - -0.9 211,910 - -2.9 211,910 - -3.3 211,910 - -0.7 211,910 - +1.0 211,910 - -1.6 211,910 - +2.0 211,910 - -1.9 211,910 - -1.7 211,910 - +1.1 211,910 - -0.6 211,910 - +0.4 211,910 - -2.0 211,910 - +0.4 211,910 - -0.0 211,910 - +1.1 211,910 - +0.4 211,910 - -0.3 211,910 - -1.1 211,910 - -1.2 211,920 - -2.4 211,920 - -2.6 211,920 - +0.4 211,921 + +0.1 211,921 + -2.5 211,921 + -1.9 211,921 + -1.3 211,921 + -0.3 211,921 + -1.1 211,921 + -1.1 211,921 + -2.2 211,921 + -1.8 211,921 + -2.2 211,921 + -1.3 211,921 + -2.1 211,921 + -1.7 211,922 - -0.0 211,922 - -1.2 211,922 - -0.9 211,922 - -0.3 211,922 - +0.4 211,922 - -0.1 211,922 - -2.4 211,988 + -1.9 211,988 + -1.3 211,989 - -1.5 212,044 + Psyr_0198 0.10 -0.7 212,044 + Psyr_0198 0.10 -2.5 212,045 - Psyr_0198 0.10 -1.9 212,045 - Psyr_0198 0.10 -3.3 212,167 + Psyr_0198 0.20 -2.2 212,168 - Psyr_0198 0.20 -4.0 212,170 + Psyr_0198 0.20 -3.1 212,170 + Psyr_0198 0.20 -4.4 212,170 + Psyr_0198 0.20 -2.8 212,170 + Psyr_0198 0.20 -3.8 212,170 + Psyr_0198 0.20 -3.1 212,171 - Psyr_0198 0.20 -1.8 212,171 - Psyr_0198 0.20 -0.9 212,171 - Psyr_0198 0.20 -4.1 212,171 - Psyr_0198 0.20 -3.6 212,633 - Psyr_0198 0.55 -3.9 212,638 + Psyr_0198 0.56 -2.8 212,638 + Psyr_0198 0.56 +0.6 212,638 + Psyr_0198 0.56 -2.8 212,639 - Psyr_0198 0.56 -3.9 212,639 - Psyr_0198 0.56 -1.0 212,830 + Psyr_0198 0.70 -2.4 212,830 + Psyr_0198 0.70 -2.6 212,830 + Psyr_0198 0.70 -3.1
Or see this region's nucleotide sequence