Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0030 and Psyr_0031 are separated by 144 nucleotides Psyr_0031 and Psyr_0032 are separated by 266 nucleotides Psyr_0032 and Psyr_0033 are separated by 125 nucleotides
Psyr_0030: Psyr_0030 - transcriptional regulator, LysR family, at 34,350 to 35,300
_0030
Psyr_0031: Psyr_0031 - Alpha/beta hydrolase fold protein, at 35,445 to 36,269
_0031
Psyr_0032: Psyr_0032 - conserved hypothetical protein, at 36,536 to 37,066
_0032
Psyr_0033: Psyr_0033 - tryptophan synthase, alpha chain, at 37,192 to 38,001
_0033
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.524 kb on + strand, within Psyr_0030 at 34.524 kb on + strand, within Psyr_0030 at 34.525 kb on - strand, within Psyr_0030 at 34.532 kb on + strand, within Psyr_0030 at 34.609 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.979 kb on - strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.298 kb on + strand at 35.298 kb on + strand at 35.298 kb on + strand at 35.298 kb on + strand at 35.298 kb on + strand at 35.298 kb on + strand at 35.298 kb on + strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.299 kb on - strand at 35.301 kb on + strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.365 kb on + strand at 35.365 kb on + strand at 35.365 kb on + strand at 35.366 kb on - strand at 35.366 kb on - strand at 35.366 kb on - strand at 35.368 kb on - strand at 35.429 kb on + strand at 35.429 kb on + strand at 35.429 kb on + strand at 35.430 kb on - strand at 35.430 kb on - strand at 35.455 kb on + strand at 35.455 kb on + strand at 35.455 kb on + strand at 35.456 kb on - strand at 35.456 kb on - strand at 35.456 kb on - strand at 35.456 kb on - strand at 35.456 kb on - strand at 35.481 kb on + strand at 35.481 kb on + strand at 35.482 kb on - strand at 35.482 kb on - strand at 35.509 kb on + strand at 35.509 kb on + strand at 35.509 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.526 kb on + strand at 35.527 kb on - strand at 35.527 kb on - strand at 35.527 kb on - strand at 35.527 kb on - strand at 35.564 kb on + strand, within Psyr_0031 at 35.564 kb on + strand, within Psyr_0031 at 35.716 kb on + strand, within Psyr_0031 at 35.716 kb on + strand, within Psyr_0031 at 35.717 kb on - strand, within Psyr_0031 at 35.802 kb on + strand, within Psyr_0031 at 35.802 kb on + strand, within Psyr_0031 at 35.803 kb on - strand, within Psyr_0031 at 35.803 kb on - strand, within Psyr_0031 at 35.803 kb on - strand, within Psyr_0031 at 35.835 kb on + strand, within Psyr_0031 at 35.835 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.838 kb on + strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.839 kb on - strand, within Psyr_0031 at 35.927 kb on + strand, within Psyr_0031 at 35.949 kb on + strand, within Psyr_0031 at 35.950 kb on - strand, within Psyr_0031 at 35.950 kb on - strand, within Psyr_0031 at 35.950 kb on - strand, within Psyr_0031 at 35.950 kb on - strand, within Psyr_0031 at 35.950 kb on - strand, within Psyr_0031 at 36.162 kb on + strand, within Psyr_0031 at 36.162 kb on + strand, within Psyr_0031 at 36.162 kb on + strand, within Psyr_0031 at 36.163 kb on - strand, within Psyr_0031 at 36.163 kb on - strand, within Psyr_0031 at 36.163 kb on - strand, within Psyr_0031 at 36.327 kb on + strand at 36.327 kb on + strand at 36.328 kb on - strand at 36.328 kb on - strand at 36.328 kb on - strand at 36.340 kb on + strand at 36.340 kb on + strand at 36.341 kb on - strand at 36.341 kb on - strand at 36.342 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.454 kb on + strand at 36.455 kb on - strand at 36.455 kb on - strand at 36.455 kb on - strand at 36.455 kb on - strand at 36.456 kb on + strand at 36.564 kb on + strand at 36.564 kb on + strand at 36.633 kb on + strand, within Psyr_0032 at 36.633 kb on + strand, within Psyr_0032 at 36.633 kb on + strand, within Psyr_0032 at 36.633 kb on + strand, within Psyr_0032 at 36.634 kb on - strand, within Psyr_0032 at 36.634 kb on - strand, within Psyr_0032 at 36.634 kb on - strand, within Psyr_0032 at 36.634 kb on - strand, within Psyr_0032 at 36.634 kb on - strand, within Psyr_0032 at 36.645 kb on + strand, within Psyr_0032 at 36.646 kb on - strand, within Psyr_0032 at 36.713 kb on + strand, within Psyr_0032 at 36.713 kb on + strand, within Psyr_0032 at 36.713 kb on + strand, within Psyr_0032 at 36.714 kb on - strand, within Psyr_0032 at 36.714 kb on - strand, within Psyr_0032 at 36.902 kb on - strand, within Psyr_0032 at 37.045 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.140 kb on + strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.141 kb on - strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.144 kb on + strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.145 kb on - strand at 37.176 kb on - strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.210 kb on + strand at 37.210 kb on + strand at 37.211 kb on - strand at 37.211 kb on - strand at 37.211 kb on - strand at 37.211 kb on - strand at 37.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 34,524 + Psyr_0030 0.18 +0.4 34,524 + Psyr_0030 0.18 +1.5 34,525 - Psyr_0030 0.18 -0.3 34,532 + Psyr_0030 0.19 +0.4 34,609 + Psyr_0030 0.27 +1.1 34,978 + Psyr_0030 0.66 -0.6 34,978 + Psyr_0030 0.66 -1.6 34,978 + Psyr_0030 0.66 -1.6 34,978 + Psyr_0030 0.66 -1.5 34,978 + Psyr_0030 0.66 -1.8 34,978 + Psyr_0030 0.66 +0.8 34,978 + Psyr_0030 0.66 +0.4 34,979 - Psyr_0030 0.66 +0.6 35,037 + Psyr_0030 0.72 +0.4 35,037 + Psyr_0030 0.72 +1.2 35,037 + Psyr_0030 0.72 +0.7 35,037 + Psyr_0030 0.72 +0.3 35,037 + Psyr_0030 0.72 -2.2 35,037 + Psyr_0030 0.72 -0.0 35,038 - Psyr_0030 0.72 -0.6 35,038 - Psyr_0030 0.72 -0.6 35,038 - Psyr_0030 0.72 +0.2 35,038 - Psyr_0030 0.72 +1.4 35,038 - Psyr_0030 0.72 +0.4 35,169 + Psyr_0030 0.86 +0.6 35,169 + Psyr_0030 0.86 +0.1 35,172 + Psyr_0030 0.86 +0.3 35,172 + Psyr_0030 0.86 -0.8 35,172 + Psyr_0030 0.86 +0.8 35,172 + Psyr_0030 0.86 -0.7 35,172 + Psyr_0030 0.86 -0.2 35,172 + Psyr_0030 0.86 +0.4 35,172 + Psyr_0030 0.86 +0.9 35,172 + Psyr_0030 0.86 -1.4 35,173 - Psyr_0030 0.87 -1.2 35,173 - Psyr_0030 0.87 -0.6 35,173 - Psyr_0030 0.87 +1.6 35,173 - Psyr_0030 0.87 -0.2 35,173 - Psyr_0030 0.87 +0.0 35,173 - Psyr_0030 0.87 +0.6 35,298 + -0.6 35,298 + +0.0 35,298 + +0.4 35,298 + +0.1 35,298 + -0.3 35,298 + -0.8 35,298 + +0.2 35,299 - -1.3 35,299 - +0.8 35,299 - +2.4 35,299 - -0.8 35,299 - +0.8 35,299 - +0.4 35,299 - -1.0 35,299 - -0.1 35,299 - +0.8 35,301 + -0.3 35,302 - -1.8 35,302 - +0.7 35,302 - -0.1 35,302 - +0.9 35,302 - -0.2 35,302 - -0.2 35,365 + -1.2 35,365 + -0.6 35,365 + +0.7 35,366 - -0.2 35,366 - -1.0 35,366 - -0.2 35,368 - -0.3 35,429 + -0.1 35,429 + -0.2 35,429 + +0.8 35,430 - +0.2 35,430 - -0.3 35,455 + +1.1 35,455 + +0.0 35,455 + +0.1 35,456 - -0.3 35,456 - -0.8 35,456 - +0.2 35,456 - +0.6 35,456 - -1.7 35,481 + -1.5 35,481 + -0.2 35,482 - -0.3 35,482 - -1.0 35,509 + -2.2 35,509 + +0.3 35,509 + +0.4 35,526 + -0.5 35,526 + -0.0 35,526 + -0.1 35,526 + +0.4 35,526 + +0.2 35,526 + +0.4 35,526 + +0.3 35,527 - -0.6 35,527 - +0.2 35,527 - +0.8 35,527 - -0.2 35,564 + Psyr_0031 0.14 +0.5 35,564 + Psyr_0031 0.14 +1.0 35,716 + Psyr_0031 0.33 +0.7 35,716 + Psyr_0031 0.33 +0.4 35,717 - Psyr_0031 0.33 +1.7 35,802 + Psyr_0031 0.43 +0.0 35,802 + Psyr_0031 0.43 +0.7 35,803 - Psyr_0031 0.43 +0.1 35,803 - Psyr_0031 0.43 +0.2 35,803 - Psyr_0031 0.43 -0.6 35,835 + Psyr_0031 0.47 -1.6 35,835 + Psyr_0031 0.47 +0.3 35,838 + Psyr_0031 0.48 -1.2 35,838 + Psyr_0031 0.48 -0.6 35,838 + Psyr_0031 0.48 +0.0 35,838 + Psyr_0031 0.48 +0.4 35,838 + Psyr_0031 0.48 -0.1 35,838 + Psyr_0031 0.48 +0.8 35,838 + Psyr_0031 0.48 -0.6 35,838 + Psyr_0031 0.48 +0.9 35,839 - Psyr_0031 0.48 +1.1 35,839 - Psyr_0031 0.48 -1.2 35,839 - Psyr_0031 0.48 +2.0 35,839 - Psyr_0031 0.48 -1.3 35,839 - Psyr_0031 0.48 -1.5 35,839 - Psyr_0031 0.48 -0.6 35,927 + Psyr_0031 0.58 +1.4 35,949 + Psyr_0031 0.61 -1.7 35,950 - Psyr_0031 0.61 +2.0 35,950 - Psyr_0031 0.61 +0.9 35,950 - Psyr_0031 0.61 -1.2 35,950 - Psyr_0031 0.61 +0.6 35,950 - Psyr_0031 0.61 -0.1 36,162 + Psyr_0031 0.87 +0.0 36,162 + Psyr_0031 0.87 +0.6 36,162 + Psyr_0031 0.87 -1.2 36,163 - Psyr_0031 0.87 -0.4 36,163 - Psyr_0031 0.87 +2.4 36,163 - Psyr_0031 0.87 +0.1 36,327 + +0.1 36,327 + +0.3 36,328 - +0.8 36,328 - -0.1 36,328 - +0.1 36,340 + -0.4 36,340 + +1.6 36,341 - -0.2 36,341 - -0.3 36,342 + +0.0 36,454 + +0.1 36,454 + +2.0 36,454 + -1.9 36,454 + +1.4 36,454 + +0.6 36,454 + -1.9 36,454 + +0.1 36,454 + -0.1 36,454 + -0.3 36,454 + -0.7 36,454 + -1.6 36,455 - +0.6 36,455 - +0.4 36,455 - +0.3 36,455 - -0.1 36,456 + +0.4 36,564 + -0.3 36,564 + +0.7 36,633 + Psyr_0032 0.18 +1.8 36,633 + Psyr_0032 0.18 -0.9 36,633 + Psyr_0032 0.18 -0.8 36,633 + Psyr_0032 0.18 +0.4 36,634 - Psyr_0032 0.18 -1.3 36,634 - Psyr_0032 0.18 +0.8 36,634 - Psyr_0032 0.18 -0.1 36,634 - Psyr_0032 0.18 +1.2 36,634 - Psyr_0032 0.18 +1.5 36,645 + Psyr_0032 0.21 -0.1 36,646 - Psyr_0032 0.21 +1.4 36,713 + Psyr_0032 0.33 -0.2 36,713 + Psyr_0032 0.33 +0.0 36,713 + Psyr_0032 0.33 -0.1 36,714 - Psyr_0032 0.34 -0.7 36,714 - Psyr_0032 0.34 +2.1 36,902 - Psyr_0032 0.69 +0.0 37,045 + +1.2 37,140 + -2.2 37,140 + -2.6 37,140 + +1.3 37,140 + -1.0 37,140 + +0.1 37,140 + +0.4 37,140 + -2.2 37,140 + +1.2 37,140 + +1.4 37,140 + -0.7 37,140 + +0.2 37,141 - +0.3 37,141 - -0.3 37,141 - -1.7 37,141 - +0.3 37,141 - -0.3 37,141 - +1.1 37,141 - -0.1 37,141 - +0.3 37,141 - -0.6 37,141 - -0.0 37,144 + +0.0 37,144 + -1.0 37,144 + -2.2 37,144 + +1.4 37,144 + -2.2 37,144 + +1.0 37,144 + -0.5 37,145 - +0.8 37,145 - +0.3 37,145 - +0.4 37,145 - +0.4 37,145 - -1.2 37,145 - -0.8 37,145 - -1.6 37,145 - -0.2 37,145 - +0.8 37,176 - -1.3 37,207 - +1.5 37,207 - -0.4 37,210 + -0.3 37,210 + -0.1 37,211 - +1.4 37,211 - +0.8 37,211 - +0.6 37,211 - -0.5 37,211 - +1.0
Or see this region's nucleotide sequence