Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_867 and Pf6N2E2_868 are separated by 319 nucleotides Pf6N2E2_868 and Pf6N2E2_869 are separated by 101 nucleotides Pf6N2E2_869 and Pf6N2E2_870 are separated by 182 nucleotides Pf6N2E2_870 and Pf6N2E2_871 overlap by 4 nucleotides
Pf6N2E2_867 - PhaK-like protein, at 1,015,416 to 1,016,696
_867
Pf6N2E2_868 - Transcriptional regulator, HxlR family, at 1,017,016 to 1,017,399
_868
Pf6N2E2_869 - FMN oxidoreductase, at 1,017,501 to 1,018,619
_869
Pf6N2E2_870 - DNA-binding response regulator, at 1,018,802 to 1,019,533
_870
Pf6N2E2_871 - sensor histidine kinase, at 1,019,530 to 1,020,912
_871
Position (kb)
1017
1018
1019 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.510 kb on - strand, within Pf6N2E2_867 at 1016.565 kb on + strand, within Pf6N2E2_867 at 1016.677 kb on - strand at 1016.692 kb on + strand at 1016.694 kb on + strand at 1016.736 kb on + strand at 1016.736 kb on + strand at 1016.737 kb on - strand at 1016.737 kb on - strand at 1016.829 kb on - strand at 1016.829 kb on - strand at 1016.880 kb on + strand at 1016.882 kb on + strand at 1016.882 kb on + strand at 1016.986 kb on + strand at 1016.986 kb on + strand at 1016.986 kb on + strand at 1016.986 kb on + strand at 1016.995 kb on + strand at 1017.153 kb on - strand, within Pf6N2E2_868 at 1017.232 kb on - strand, within Pf6N2E2_868 at 1017.232 kb on - strand, within Pf6N2E2_868 at 1017.328 kb on - strand, within Pf6N2E2_868 at 1017.415 kb on + strand at 1017.416 kb on - strand at 1017.416 kb on - strand at 1017.416 kb on - strand at 1017.417 kb on + strand at 1017.418 kb on - strand at 1017.418 kb on - strand at 1017.418 kb on - strand at 1017.418 kb on - strand at 1017.422 kb on - strand at 1017.422 kb on - strand at 1017.463 kb on - strand at 1017.470 kb on - strand at 1017.526 kb on + strand at 1017.527 kb on - strand at 1017.636 kb on + strand, within Pf6N2E2_869 at 1017.636 kb on + strand, within Pf6N2E2_869 at 1017.687 kb on - strand, within Pf6N2E2_869 at 1017.687 kb on - strand, within Pf6N2E2_869 at 1017.840 kb on + strand, within Pf6N2E2_869 at 1018.026 kb on + strand, within Pf6N2E2_869 at 1018.026 kb on + strand, within Pf6N2E2_869 at 1018.056 kb on - strand, within Pf6N2E2_869 at 1018.201 kb on - strand, within Pf6N2E2_869 at 1018.513 kb on + strand at 1018.603 kb on + strand at 1018.666 kb on + strand at 1018.666 kb on + strand at 1018.666 kb on + strand at 1018.666 kb on + strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.667 kb on - strand at 1018.708 kb on - strand at 1018.732 kb on + strand at 1018.754 kb on + strand at 1018.755 kb on - strand at 1019.137 kb on - strand, within Pf6N2E2_870 at 1019.217 kb on - strand, within Pf6N2E2_870 at 1019.320 kb on - strand, within Pf6N2E2_870 at 1019.320 kb on - strand, within Pf6N2E2_870 at 1019.320 kb on - strand, within Pf6N2E2_870 at 1019.409 kb on + strand, within Pf6N2E2_870 at 1019.409 kb on + strand, within Pf6N2E2_870 at 1019.410 kb on - strand, within Pf6N2E2_870 at 1019.410 kb on - strand, within Pf6N2E2_870 at 1019.476 kb on + strand at 1019.610 kb on + strand at 1019.610 kb on + strand at 1019.611 kb on - strand at 1019.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 1,016,510 - Pf6N2E2_867 0.85 -1.0 1,016,510 - Pf6N2E2_867 0.85 +0.4 1,016,510 - Pf6N2E2_867 0.85 +0.6 1,016,510 - Pf6N2E2_867 0.85 +0.2 1,016,510 - Pf6N2E2_867 0.85 +0.4 1,016,510 - Pf6N2E2_867 0.85 +0.4 1,016,510 - Pf6N2E2_867 0.85 -0.8 1,016,510 - Pf6N2E2_867 0.85 +1.2 1,016,510 - Pf6N2E2_867 0.85 -0.4 1,016,510 - Pf6N2E2_867 0.85 +0.2 1,016,565 + Pf6N2E2_867 0.90 +0.8 1,016,677 - +0.4 1,016,692 + -0.2 1,016,694 + -0.6 1,016,736 + +1.0 1,016,736 + +0.6 1,016,737 - +0.6 1,016,737 - +1.2 1,016,829 - +0.4 1,016,829 - -0.5 1,016,880 + +0.5 1,016,882 + -0.8 1,016,882 + +0.2 1,016,986 + -0.6 1,016,986 + +0.6 1,016,986 + +0.4 1,016,986 + +0.4 1,016,995 + +0.0 1,017,153 - Pf6N2E2_868 0.36 -0.1 1,017,232 - Pf6N2E2_868 0.56 +0.3 1,017,232 - Pf6N2E2_868 0.56 -1.3 1,017,328 - Pf6N2E2_868 0.81 -1.6 1,017,415 + +0.6 1,017,416 - -0.9 1,017,416 - -0.0 1,017,416 - +0.0 1,017,417 + +1.0 1,017,418 - +0.6 1,017,418 - -0.1 1,017,418 - -0.9 1,017,418 - +0.4 1,017,422 - +0.5 1,017,422 - +1.6 1,017,463 - +0.9 1,017,470 - -1.6 1,017,526 + +0.5 1,017,527 - -0.6 1,017,636 + Pf6N2E2_869 0.12 -1.4 1,017,636 + Pf6N2E2_869 0.12 -0.7 1,017,687 - Pf6N2E2_869 0.17 -3.1 1,017,687 - Pf6N2E2_869 0.17 -1.6 1,017,840 + Pf6N2E2_869 0.30 -0.0 1,018,026 + Pf6N2E2_869 0.47 -1.4 1,018,026 + Pf6N2E2_869 0.47 -0.8 1,018,056 - Pf6N2E2_869 0.50 -0.2 1,018,201 - Pf6N2E2_869 0.63 -0.4 1,018,513 + +1.8 1,018,603 + -0.8 1,018,666 + +0.8 1,018,666 + -0.2 1,018,666 + -1.1 1,018,666 + +0.1 1,018,667 - -0.8 1,018,667 - -1.7 1,018,667 - -1.7 1,018,667 - +0.0 1,018,667 - -0.5 1,018,667 - +1.1 1,018,667 - -0.8 1,018,667 - +1.8 1,018,708 - +0.9 1,018,732 + -0.4 1,018,754 + +1.8 1,018,755 - -0.3 1,019,137 - Pf6N2E2_870 0.46 +0.2 1,019,217 - Pf6N2E2_870 0.57 +1.5 1,019,320 - Pf6N2E2_870 0.71 +0.0 1,019,320 - Pf6N2E2_870 0.71 -3.2 1,019,320 - Pf6N2E2_870 0.71 +1.1 1,019,409 + Pf6N2E2_870 0.83 +0.3 1,019,409 + Pf6N2E2_870 0.83 -2.5 1,019,410 - Pf6N2E2_870 0.83 -1.0 1,019,410 - Pf6N2E2_870 0.83 -1.3 1,019,476 + +1.2 1,019,610 + +0.0 1,019,610 + -0.5 1,019,611 - -0.0 1,019,611 - +0.8
Or see this region's nucleotide sequence