Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5533 and Pf6N2E2_5534 are separated by 120 nucleotides Pf6N2E2_5534 and Pf6N2E2_5535 are separated by 181 nucleotides Pf6N2E2_5535 and Pf6N2E2_5536 are separated by 113 nucleotides
Pf6N2E2_5533 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 6,349,048 to 6,350,823
_5533
Pf6N2E2_5534 - FIG000859: hypothetical protein YebC, at 6,350,944 to 6,351,690
_5534
Pf6N2E2_5535 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 6,351,872 to 6,352,396
_5535
Pf6N2E2_5536 - Holliday junction DNA helicase RuvA, at 6,352,510 to 6,353,118
_5536
Position (kb)
6350
6351
6352 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6350.876 kb on + strand at 6350.876 kb on + strand at 6350.877 kb on - strand at 6350.901 kb on - strand at 6351.202 kb on + strand, within Pf6N2E2_5534 at 6351.202 kb on + strand, within Pf6N2E2_5534 at 6351.202 kb on + strand, within Pf6N2E2_5534 at 6351.202 kb on + strand, within Pf6N2E2_5534 at 6351.203 kb on - strand, within Pf6N2E2_5534 at 6351.203 kb on - strand, within Pf6N2E2_5534 at 6351.268 kb on - strand, within Pf6N2E2_5534 at 6351.484 kb on + strand, within Pf6N2E2_5534 at 6351.484 kb on + strand, within Pf6N2E2_5534 at 6351.484 kb on + strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.485 kb on - strand, within Pf6N2E2_5534 at 6351.847 kb on - strand at 6351.855 kb on + strand at 6351.872 kb on - strand at 6351.879 kb on + strand at 6352.572 kb on - strand, within Pf6N2E2_5536
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 6,350,876 + -1.7 6,350,876 + -2.0 6,350,877 - -1.0 6,350,901 - -3.1 6,351,202 + Pf6N2E2_5534 0.35 -1.0 6,351,202 + Pf6N2E2_5534 0.35 -0.9 6,351,202 + Pf6N2E2_5534 0.35 -1.7 6,351,202 + Pf6N2E2_5534 0.35 -2.2 6,351,203 - Pf6N2E2_5534 0.35 -1.2 6,351,203 - Pf6N2E2_5534 0.35 -3.3 6,351,268 - Pf6N2E2_5534 0.43 -3.7 6,351,484 + Pf6N2E2_5534 0.72 -1.8 6,351,484 + Pf6N2E2_5534 0.72 -2.6 6,351,484 + Pf6N2E2_5534 0.72 -1.1 6,351,485 - Pf6N2E2_5534 0.72 -2.6 6,351,485 - Pf6N2E2_5534 0.72 -3.1 6,351,485 - Pf6N2E2_5534 0.72 -1.7 6,351,485 - Pf6N2E2_5534 0.72 +0.1 6,351,485 - Pf6N2E2_5534 0.72 -0.8 6,351,485 - Pf6N2E2_5534 0.72 -0.8 6,351,847 - -0.7 6,351,855 + -0.1 6,351,872 - -1.7 6,351,879 + -1.5 6,352,572 - Pf6N2E2_5536 0.10 -2.5
Or see this region's nucleotide sequence