Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4590

Experiment: Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4587 and Pf6N2E2_4588 are separated by 73 nucleotidesPf6N2E2_4588 and Pf6N2E2_4589 are separated by 79 nucleotidesPf6N2E2_4589 and Pf6N2E2_4590 are separated by 54 nucleotidesPf6N2E2_4590 and Pf6N2E2_4591 are separated by 9 nucleotidesPf6N2E2_4591 and Pf6N2E2_4592 are separated by 144 nucleotides Pf6N2E2_4587 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 5,317,569 to 5,318,291 _4587 Pf6N2E2_4588 - COG2363, at 5,318,365 to 5,318,745 _4588 Pf6N2E2_4589 - Sulfur carrier protein ThiS, at 5,318,825 to 5,319,043 _4589 Pf6N2E2_4590 - Thiazole biosynthesis protein ThiG, at 5,319,098 to 5,319,892 _4590 Pf6N2E2_4591 - tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33), at 5,319,902 to 5,320,627 _4591 Pf6N2E2_4592 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 5,320,772 to 5,321,095 _4592 Position (kb) 5319 5320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5318.280 kb on + strandat 5318.281 kb on - strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.292 kb on - strandat 5318.327 kb on + strandat 5318.328 kb on - strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.373 kb on + strandat 5318.373 kb on + strandat 5318.374 kb on - strandat 5318.374 kb on - strandat 5318.467 kb on + strand, within Pf6N2E2_4588at 5318.467 kb on + strand, within Pf6N2E2_4588at 5318.468 kb on - strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.512 kb on - strand, within Pf6N2E2_4588at 5318.512 kb on - strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.759 kb on + strandat 5318.759 kb on + strandat 5318.760 kb on - strandat 5318.760 kb on - strandat 5318.760 kb on - strandat 5318.805 kb on + strandat 5318.805 kb on + strandat 5319.142 kb on + strandat 5319.142 kb on + strandat 5319.143 kb on - strandat 5319.180 kb on - strand, within Pf6N2E2_4590at 5319.314 kb on + strand, within Pf6N2E2_4590at 5319.515 kb on + strand, within Pf6N2E2_4590at 5319.515 kb on + strand, within Pf6N2E2_4590at 5319.515 kb on + strand, within Pf6N2E2_4590at 5319.516 kb on - strand, within Pf6N2E2_4590at 5319.516 kb on - strand, within Pf6N2E2_4590at 5319.516 kb on - strand, within Pf6N2E2_4590at 5319.624 kb on - strand, within Pf6N2E2_4590at 5319.624 kb on - strand, within Pf6N2E2_4590at 5319.821 kb on + strandat 5319.852 kb on - strandat 5319.890 kb on + strandat 5319.890 kb on + strandat 5319.891 kb on - strandat 5319.891 kb on - strandat 5319.891 kb on - strandat 5319.891 kb on - strandat 5319.891 kb on - strandat 5319.891 kb on - strandat 5320.457 kb on + strand, within Pf6N2E2_4591at 5320.457 kb on + strand, within Pf6N2E2_4591at 5320.457 kb on + strand, within Pf6N2E2_4591at 5320.457 kb on + strand, within Pf6N2E2_4591at 5320.458 kb on - strand, within Pf6N2E2_4591at 5320.458 kb on - strand, within Pf6N2E2_4591at 5320.466 kb on + strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.467 kb on - strand, within Pf6N2E2_4591at 5320.626 kb on - strandat 5320.690 kb on + strandat 5320.690 kb on + strandat 5320.691 kb on - strandat 5320.691 kb on - strandat 5320.716 kb on + strandat 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.836 kb on + strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.837 kb on - strand, within Pf6N2E2_4592at 5320.881 kb on + strand, within Pf6N2E2_4592at 5320.881 kb on + strand, within Pf6N2E2_4592at 5320.881 kb on + strand, within Pf6N2E2_4592at 5320.882 kb on - strand, within Pf6N2E2_4592at 5320.882 kb on - strand, within Pf6N2E2_4592at 5320.882 kb on - strand, within Pf6N2E2_4592at 5320.882 kb on - strand, within Pf6N2E2_4592

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 600 mM
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5,318,280 + -0.1
5,318,281 - -0.2
5,318,291 + -0.1
5,318,291 + +0.4
5,318,291 + +0.9
5,318,291 + -1.1
5,318,291 + +0.2
5,318,292 - +0.3
5,318,327 + -0.6
5,318,328 - +0.7
5,318,329 + -0.5
5,318,329 + +0.5
5,318,329 + -3.0
5,318,329 + -0.6
5,318,329 + -0.0
5,318,329 + +0.1
5,318,329 + -0.6
5,318,329 + +1.1
5,318,329 + -1.0
5,318,329 + -0.6
5,318,329 + -1.3
5,318,329 + -1.7
5,318,329 + -1.2
5,318,330 - +0.8
5,318,330 - -0.7
5,318,330 - +0.5
5,318,330 - +0.8
5,318,330 - +1.7
5,318,330 - +0.9
5,318,330 - +0.4
5,318,330 - +0.6
5,318,330 - +2.4
5,318,330 - +0.9
5,318,373 + -4.5
5,318,373 + -2.0
5,318,374 - -1.0
5,318,374 - -1.3
5,318,467 + Pf6N2E2_4588 0.27 +0.3
5,318,467 + Pf6N2E2_4588 0.27 -1.1
5,318,468 - Pf6N2E2_4588 0.27 -0.5
5,318,497 + Pf6N2E2_4588 0.35 -0.8
5,318,497 + Pf6N2E2_4588 0.35 +0.9
5,318,497 + Pf6N2E2_4588 0.35 +0.6
5,318,497 + Pf6N2E2_4588 0.35 -0.0
5,318,497 + Pf6N2E2_4588 0.35 +1.4
5,318,498 - Pf6N2E2_4588 0.35 +0.0
5,318,498 - Pf6N2E2_4588 0.35 -0.2
5,318,498 - Pf6N2E2_4588 0.35 +0.7
5,318,498 - Pf6N2E2_4588 0.35 -1.9
5,318,498 - Pf6N2E2_4588 0.35 -0.0
5,318,512 - Pf6N2E2_4588 0.39 +0.6
5,318,512 - Pf6N2E2_4588 0.39 +3.2
5,318,603 + Pf6N2E2_4588 0.62 +0.9
5,318,603 + Pf6N2E2_4588 0.62 +1.8
5,318,603 + Pf6N2E2_4588 0.62 -1.1
5,318,603 + Pf6N2E2_4588 0.62 +1.0
5,318,603 + Pf6N2E2_4588 0.62 -1.6
5,318,603 + Pf6N2E2_4588 0.62 -0.2
5,318,603 + Pf6N2E2_4588 0.62 +1.2
5,318,603 + Pf6N2E2_4588 0.62 -0.9
5,318,603 + Pf6N2E2_4588 0.62 +0.2
5,318,603 + Pf6N2E2_4588 0.62 -0.5
5,318,603 + Pf6N2E2_4588 0.62 -0.6
5,318,604 - Pf6N2E2_4588 0.63 +0.2
5,318,604 - Pf6N2E2_4588 0.63 +1.1
5,318,604 - Pf6N2E2_4588 0.63 -0.5
5,318,604 - Pf6N2E2_4588 0.63 +1.1
5,318,604 - Pf6N2E2_4588 0.63 -1.6
5,318,604 - Pf6N2E2_4588 0.63 -0.8
5,318,604 - Pf6N2E2_4588 0.63 -0.4
5,318,604 - Pf6N2E2_4588 0.63 -0.2
5,318,604 - Pf6N2E2_4588 0.63 +2.0
5,318,604 - Pf6N2E2_4588 0.63 -1.3
5,318,604 - Pf6N2E2_4588 0.63 +1.3
5,318,604 - Pf6N2E2_4588 0.63 -1.3
5,318,604 - Pf6N2E2_4588 0.63 +0.9
5,318,623 + Pf6N2E2_4588 0.68 +1.0
5,318,623 + Pf6N2E2_4588 0.68 +0.3
5,318,623 + Pf6N2E2_4588 0.68 +0.6
5,318,624 - Pf6N2E2_4588 0.68 -0.6
5,318,624 - Pf6N2E2_4588 0.68 -0.1
5,318,624 - Pf6N2E2_4588 0.68 -0.1
5,318,759 + +0.6
5,318,759 + -0.1
5,318,760 - -0.9
5,318,760 - +1.2
5,318,760 - +0.9
5,318,805 + -0.0
5,318,805 + +0.9
5,319,142 + -0.3
5,319,142 + +0.1
5,319,143 - -2.0
5,319,180 - Pf6N2E2_4590 0.10 -0.6
5,319,314 + Pf6N2E2_4590 0.27 -1.3
5,319,515 + Pf6N2E2_4590 0.52 -1.2
5,319,515 + Pf6N2E2_4590 0.52 -2.6
5,319,515 + Pf6N2E2_4590 0.52 -0.1
5,319,516 - Pf6N2E2_4590 0.53 -1.0
5,319,516 - Pf6N2E2_4590 0.53 -3.4
5,319,516 - Pf6N2E2_4590 0.53 -1.3
5,319,624 - Pf6N2E2_4590 0.66 -2.5
5,319,624 - Pf6N2E2_4590 0.66 -0.4
5,319,821 + -1.0
5,319,852 - +0.2
5,319,890 + +0.9
5,319,890 + +0.5
5,319,891 - -0.7
5,319,891 - -0.8
5,319,891 - +1.7
5,319,891 - -2.0
5,319,891 - -0.7
5,319,891 - +0.1
5,320,457 + Pf6N2E2_4591 0.76 -2.8
5,320,457 + Pf6N2E2_4591 0.76 +1.8
5,320,457 + Pf6N2E2_4591 0.76 -1.0
5,320,457 + Pf6N2E2_4591 0.76 +0.2
5,320,458 - Pf6N2E2_4591 0.77 -4.3
5,320,458 - Pf6N2E2_4591 0.77 +0.9
5,320,466 + Pf6N2E2_4591 0.78 -0.3
5,320,467 - Pf6N2E2_4591 0.78 -0.6
5,320,467 - Pf6N2E2_4591 0.78 -0.8
5,320,467 - Pf6N2E2_4591 0.78 +1.2
5,320,467 - Pf6N2E2_4591 0.78 +0.5
5,320,467 - Pf6N2E2_4591 0.78 +2.3
5,320,467 - Pf6N2E2_4591 0.78 -0.1
5,320,467 - Pf6N2E2_4591 0.78 -1.2
5,320,626 - +0.4
5,320,690 + +0.9
5,320,690 + -0.6
5,320,691 - -2.0
5,320,691 - -1.5
5,320,716 + +0.6
5,320,836 + Pf6N2E2_4592 0.20 -1.5
5,320,836 + Pf6N2E2_4592 0.20 +1.5
5,320,836 + Pf6N2E2_4592 0.20 +0.1
5,320,836 + Pf6N2E2_4592 0.20 -1.1
5,320,836 + Pf6N2E2_4592 0.20 +0.3
5,320,836 + Pf6N2E2_4592 0.20 +0.2
5,320,837 - Pf6N2E2_4592 0.20 -0.4
5,320,837 - Pf6N2E2_4592 0.20 -1.0
5,320,837 - Pf6N2E2_4592 0.20 +1.6
5,320,837 - Pf6N2E2_4592 0.20 +0.3
5,320,837 - Pf6N2E2_4592 0.20 -2.0
5,320,837 - Pf6N2E2_4592 0.20 -0.1
5,320,837 - Pf6N2E2_4592 0.20 -2.3
5,320,837 - Pf6N2E2_4592 0.20 +1.0
5,320,881 + Pf6N2E2_4592 0.34 +0.6
5,320,881 + Pf6N2E2_4592 0.34 +0.6
5,320,881 + Pf6N2E2_4592 0.34 -2.9
5,320,882 - Pf6N2E2_4592 0.34 +0.6
5,320,882 - Pf6N2E2_4592 0.34 -0.2
5,320,882 - Pf6N2E2_4592 0.34 +0.9
5,320,882 - Pf6N2E2_4592 0.34 +0.8

Or see this region's nucleotide sequence