Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_418 and Pf6N2E2_419 are separated by 39 nucleotides Pf6N2E2_419 and Pf6N2E2_420 are separated by 15 nucleotides Pf6N2E2_420 and Pf6N2E2_421 are separated by 11 nucleotides Pf6N2E2_421 and Pf6N2E2_422 are separated by 551 nucleotides
Pf6N2E2_418 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 486,040 to 488,142
_418
Pf6N2E2_419 - STAS domain protein, at 488,182 to 488,466
_419
Pf6N2E2_420 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 488,482 to 488,850
_420
Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013
_421
Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863
_422
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.148 kb on + strand at 488.149 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.454 kb on - strand at 488.631 kb on - strand, within Pf6N2E2_420 at 488.631 kb on - strand, within Pf6N2E2_420 at 488.836 kb on + strand at 488.837 kb on - strand at 488.864 kb on - strand at 488.864 kb on - strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.496 kb on + strand, within Pf6N2E2_421 at 489.497 kb on - strand, within Pf6N2E2_421 at 489.497 kb on - strand, within Pf6N2E2_421 at 489.514 kb on - strand, within Pf6N2E2_421 at 489.514 kb on - strand, within Pf6N2E2_421 at 489.903 kb on + strand at 489.904 kb on - strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.117 kb on - strand at 490.117 kb on - strand at 490.178 kb on + strand at 490.179 kb on - strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.197 kb on + strand at 490.198 kb on - strand at 490.213 kb on - strand at 490.262 kb on + strand at 490.263 kb on - strand at 490.544 kb on + strand at 490.545 kb on - strand at 490.545 kb on - strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.904 kb on + strand, within Pf6N2E2_422 at 490.904 kb on + strand, within Pf6N2E2_422 at 490.905 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 488,148 + +0.6 488,149 - -0.4 488,170 - -2.9 488,170 - -0.2 488,170 - -1.8 488,278 + Pf6N2E2_419 0.34 +0.6 488,278 + Pf6N2E2_419 0.34 -1.4 488,278 + Pf6N2E2_419 0.34 +1.5 488,278 + Pf6N2E2_419 0.34 +1.0 488,279 - Pf6N2E2_419 0.34 +1.0 488,279 - Pf6N2E2_419 0.34 +1.0 488,279 - Pf6N2E2_419 0.34 -0.2 488,279 - Pf6N2E2_419 0.34 +1.3 488,400 - Pf6N2E2_419 0.76 +1.8 488,400 - Pf6N2E2_419 0.76 -0.9 488,454 - +1.6 488,631 - Pf6N2E2_420 0.40 +1.3 488,631 - Pf6N2E2_420 0.40 +1.2 488,836 + -2.2 488,837 - -0.0 488,864 - -1.2 488,864 - -1.0 488,941 + -0.3 488,941 + -1.1 488,941 + -1.2 488,941 + +0.3 488,941 + -2.0 488,942 - -0.5 489,496 + Pf6N2E2_421 0.55 -1.2 489,496 + Pf6N2E2_421 0.55 -0.2 489,496 + Pf6N2E2_421 0.55 -2.2 489,496 + Pf6N2E2_421 0.55 -2.1 489,497 - Pf6N2E2_421 0.55 -2.8 489,497 - Pf6N2E2_421 0.55 -2.2 489,514 - Pf6N2E2_421 0.57 -0.1 489,514 - Pf6N2E2_421 0.57 -0.7 489,903 + +0.1 489,904 - +0.4 490,106 + +0.5 490,106 + +0.4 490,106 + +0.2 490,107 - -0.2 490,107 - -0.1 490,107 - +1.6 490,107 - -1.3 490,117 - +0.9 490,117 - -0.1 490,178 + -1.4 490,179 - +0.9 490,190 + -1.4 490,190 + +0.2 490,190 + -0.7 490,197 + -0.5 490,198 - -1.4 490,213 - -3.0 490,262 + +1.7 490,263 - -0.3 490,544 + +1.8 490,545 - -0.4 490,545 - +0.5 490,616 + -0.6 490,616 + -0.1 490,616 + +0.8 490,616 + +0.6 490,617 - -1.2 490,617 - -0.4 490,617 - +0.2 490,617 - +0.3 490,617 - +0.5 490,904 + Pf6N2E2_422 0.26 -0.1 490,904 + Pf6N2E2_422 0.26 -2.9 490,905 - Pf6N2E2_422 0.26 +0.3 490,945 - Pf6N2E2_422 0.29 -2.8 490,945 - Pf6N2E2_422 0.29 +0.1 490,945 - Pf6N2E2_422 0.29 +1.0
Or see this region's nucleotide sequence