Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2638 and Pf6N2E2_2639 are separated by 135 nucleotides Pf6N2E2_2639 and Pf6N2E2_2640 are separated by 117 nucleotides
Pf6N2E2_2638 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 3,099,950 to 3,100,765
_2638
Pf6N2E2_2639 - Transcriptional regulator, AraC family, at 3,100,901 to 3,101,650
_2639
Pf6N2E2_2640 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,101,768 to 3,102,658
_2640
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3099.921 kb on - strand at 3099.921 kb on - strand at 3099.944 kb on + strand at 3099.944 kb on + strand at 3099.945 kb on - strand at 3099.945 kb on - strand at 3099.945 kb on - strand at 3100.018 kb on - strand at 3100.018 kb on - strand at 3100.090 kb on - strand, within Pf6N2E2_2638 at 3100.129 kb on + strand, within Pf6N2E2_2638 at 3100.225 kb on + strand, within Pf6N2E2_2638 at 3100.225 kb on + strand, within Pf6N2E2_2638 at 3100.225 kb on + strand, within Pf6N2E2_2638 at 3100.226 kb on - strand, within Pf6N2E2_2638 at 3100.226 kb on - strand, within Pf6N2E2_2638 at 3100.237 kb on - strand, within Pf6N2E2_2638 at 3100.287 kb on - strand, within Pf6N2E2_2638 at 3100.317 kb on + strand, within Pf6N2E2_2638 at 3100.444 kb on + strand, within Pf6N2E2_2638 at 3100.503 kb on + strand, within Pf6N2E2_2638 at 3100.503 kb on + strand, within Pf6N2E2_2638 at 3100.503 kb on + strand, within Pf6N2E2_2638 at 3100.504 kb on - strand, within Pf6N2E2_2638 at 3100.504 kb on - strand, within Pf6N2E2_2638 at 3100.504 kb on - strand, within Pf6N2E2_2638 at 3100.504 kb on - strand, within Pf6N2E2_2638 at 3100.504 kb on - strand, within Pf6N2E2_2638 at 3100.575 kb on + strand, within Pf6N2E2_2638 at 3100.575 kb on + strand, within Pf6N2E2_2638 at 3100.575 kb on + strand, within Pf6N2E2_2638 at 3100.575 kb on + strand, within Pf6N2E2_2638 at 3100.575 kb on + strand, within Pf6N2E2_2638 at 3100.576 kb on - strand, within Pf6N2E2_2638 at 3100.576 kb on - strand, within Pf6N2E2_2638 at 3100.576 kb on - strand, within Pf6N2E2_2638 at 3100.576 kb on - strand, within Pf6N2E2_2638 at 3100.576 kb on - strand, within Pf6N2E2_2638 at 3100.624 kb on - strand, within Pf6N2E2_2638 at 3100.641 kb on + strand, within Pf6N2E2_2638 at 3100.722 kb on - strand at 3100.838 kb on + strand at 3100.838 kb on + strand at 3100.838 kb on + strand at 3100.839 kb on - strand at 3100.839 kb on - strand at 3100.839 kb on - strand at 3100.839 kb on - strand at 3100.839 kb on - strand at 3100.839 kb on - strand at 3100.871 kb on + strand at 3100.871 kb on + strand at 3100.871 kb on + strand at 3100.872 kb on - strand at 3100.872 kb on - strand at 3100.872 kb on - strand at 3100.872 kb on - strand at 3100.872 kb on - strand at 3100.872 kb on - strand at 3101.050 kb on - strand at 3101.050 kb on - strand, within Pf6N2E2_2639 at 3101.053 kb on - strand, within Pf6N2E2_2639 at 3101.346 kb on - strand, within Pf6N2E2_2639 at 3101.384 kb on + strand, within Pf6N2E2_2639 at 3101.483 kb on + strand, within Pf6N2E2_2639 at 3101.483 kb on + strand, within Pf6N2E2_2639 at 3101.484 kb on - strand, within Pf6N2E2_2639 at 3101.484 kb on - strand, within Pf6N2E2_2639 at 3101.484 kb on - strand, within Pf6N2E2_2639 at 3101.484 kb on - strand, within Pf6N2E2_2639 at 3101.484 kb on - strand, within Pf6N2E2_2639 at 3101.571 kb on - strand, within Pf6N2E2_2639 at 3101.706 kb on - strand at 3101.706 kb on - strand at 3101.706 kb on - strand at 3101.709 kb on + strand at 3101.709 kb on + strand at 3101.709 kb on + strand at 3101.709 kb on + strand at 3101.748 kb on + strand at 3101.748 kb on + strand at 3101.748 kb on + strand at 3101.748 kb on + strand at 3101.749 kb on - strand at 3101.779 kb on + strand at 3101.780 kb on - strand at 3102.506 kb on + strand, within Pf6N2E2_2640 at 3102.506 kb on + strand, within Pf6N2E2_2640
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 3,099,921 - -0.8 3,099,921 - +0.6 3,099,944 + -3.1 3,099,944 + -2.0 3,099,945 - -0.2 3,099,945 - +1.4 3,099,945 - +0.2 3,100,018 - +1.1 3,100,018 - +0.6 3,100,090 - Pf6N2E2_2638 0.17 +1.5 3,100,129 + Pf6N2E2_2638 0.22 -0.3 3,100,225 + Pf6N2E2_2638 0.34 -1.1 3,100,225 + Pf6N2E2_2638 0.34 -0.1 3,100,225 + Pf6N2E2_2638 0.34 -2.0 3,100,226 - Pf6N2E2_2638 0.34 -1.0 3,100,226 - Pf6N2E2_2638 0.34 +0.3 3,100,237 - Pf6N2E2_2638 0.35 -1.0 3,100,287 - Pf6N2E2_2638 0.41 +0.1 3,100,317 + Pf6N2E2_2638 0.45 +0.6 3,100,444 + Pf6N2E2_2638 0.61 +1.0 3,100,503 + Pf6N2E2_2638 0.68 -0.8 3,100,503 + Pf6N2E2_2638 0.68 -2.6 3,100,503 + Pf6N2E2_2638 0.68 -1.9 3,100,504 - Pf6N2E2_2638 0.68 -1.6 3,100,504 - Pf6N2E2_2638 0.68 +0.9 3,100,504 - Pf6N2E2_2638 0.68 +0.5 3,100,504 - Pf6N2E2_2638 0.68 -0.8 3,100,504 - Pf6N2E2_2638 0.68 -1.8 3,100,575 + Pf6N2E2_2638 0.77 -2.0 3,100,575 + Pf6N2E2_2638 0.77 -2.4 3,100,575 + Pf6N2E2_2638 0.77 +0.3 3,100,575 + Pf6N2E2_2638 0.77 -1.0 3,100,575 + Pf6N2E2_2638 0.77 +1.0 3,100,576 - Pf6N2E2_2638 0.77 -0.8 3,100,576 - Pf6N2E2_2638 0.77 -0.4 3,100,576 - Pf6N2E2_2638 0.77 -3.4 3,100,576 - Pf6N2E2_2638 0.77 -0.8 3,100,576 - Pf6N2E2_2638 0.77 +0.8 3,100,624 - Pf6N2E2_2638 0.83 -1.1 3,100,641 + Pf6N2E2_2638 0.85 +0.2 3,100,722 - -1.1 3,100,838 + +0.7 3,100,838 + +0.8 3,100,838 + -2.1 3,100,839 - +1.4 3,100,839 - +1.0 3,100,839 - +0.3 3,100,839 - -2.0 3,100,839 - -0.6 3,100,839 - +1.3 3,100,871 + +1.1 3,100,871 + -0.5 3,100,871 + +0.5 3,100,872 - +0.6 3,100,872 - +1.8 3,100,872 - +0.4 3,100,872 - +2.3 3,100,872 - -0.2 3,100,872 - +0.3 3,101,050 - +0.6 3,101,050 - Pf6N2E2_2639 0.20 -1.5 3,101,053 - Pf6N2E2_2639 0.20 +1.2 3,101,346 - Pf6N2E2_2639 0.59 +1.3 3,101,384 + Pf6N2E2_2639 0.64 -0.5 3,101,483 + Pf6N2E2_2639 0.78 +0.7 3,101,483 + Pf6N2E2_2639 0.78 +1.5 3,101,484 - Pf6N2E2_2639 0.78 +1.1 3,101,484 - Pf6N2E2_2639 0.78 +0.4 3,101,484 - Pf6N2E2_2639 0.78 -2.0 3,101,484 - Pf6N2E2_2639 0.78 +0.2 3,101,484 - Pf6N2E2_2639 0.78 +1.3 3,101,571 - Pf6N2E2_2639 0.89 +0.3 3,101,706 - +0.6 3,101,706 - +0.9 3,101,706 - -0.3 3,101,709 + +1.7 3,101,709 + +0.4 3,101,709 + -1.0 3,101,709 + -1.6 3,101,748 + +0.9 3,101,748 + -0.2 3,101,748 + -1.4 3,101,748 + +0.5 3,101,749 - +1.7 3,101,779 + +1.3 3,101,780 - +0.5 3,102,506 + Pf6N2E2_2640 0.83 -0.6 3,102,506 + Pf6N2E2_2640 0.83 +0.7
Or see this region's nucleotide sequence