Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1506 and Pf6N2E2_1507 are separated by 89 nucleotides Pf6N2E2_1507 and Pf6N2E2_1508 overlap by 4 nucleotides Pf6N2E2_1508 and Pf6N2E2_1509 are separated by 131 nucleotides
Pf6N2E2_1506 - Putative alkanesulfonate metabolism utilization regulator, at 1,760,507 to 1,761,238
_1506
Pf6N2E2_1507 - Sensor protein basS/pmrB (EC 2.7.3.-), at 1,761,328 to 1,762,686
_1507
Pf6N2E2_1508 - DNA-binding response regulator, at 1,762,683 to 1,763,342
_1508
Pf6N2E2_1509 - FIG00450070: hypothetical protein, at 1,763,474 to 1,763,797
_1509
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1760.650 kb on - strand, within Pf6N2E2_1506 at 1760.721 kb on + strand, within Pf6N2E2_1506 at 1760.722 kb on - strand, within Pf6N2E2_1506 at 1760.849 kb on - strand, within Pf6N2E2_1506 at 1761.105 kb on + strand, within Pf6N2E2_1506 at 1761.106 kb on - strand, within Pf6N2E2_1506 at 1761.201 kb on + strand at 1761.202 kb on - strand at 1761.246 kb on - strand at 1761.269 kb on + strand at 1761.272 kb on - strand at 1761.289 kb on + strand at 1761.289 kb on + strand at 1761.418 kb on + strand at 1761.419 kb on - strand at 1761.626 kb on + strand, within Pf6N2E2_1507 at 1761.627 kb on - strand, within Pf6N2E2_1507 at 1761.627 kb on - strand, within Pf6N2E2_1507 at 1761.693 kb on - strand, within Pf6N2E2_1507 at 1761.926 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1762.139 kb on + strand, within Pf6N2E2_1507 at 1762.230 kb on + strand, within Pf6N2E2_1507 at 1762.231 kb on - strand, within Pf6N2E2_1507 at 1762.231 kb on - strand, within Pf6N2E2_1507 at 1762.319 kb on + strand, within Pf6N2E2_1507 at 1762.320 kb on - strand, within Pf6N2E2_1507 at 1762.433 kb on + strand, within Pf6N2E2_1507 at 1762.433 kb on + strand, within Pf6N2E2_1507 at 1762.434 kb on - strand, within Pf6N2E2_1507 at 1762.434 kb on - strand, within Pf6N2E2_1507 at 1762.514 kb on - strand, within Pf6N2E2_1507 at 1762.514 kb on - strand, within Pf6N2E2_1507 at 1762.765 kb on + strand, within Pf6N2E2_1508 at 1762.765 kb on + strand, within Pf6N2E2_1508 at 1762.766 kb on - strand, within Pf6N2E2_1508 at 1762.766 kb on - strand, within Pf6N2E2_1508 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.331 kb on + strand at 1763.387 kb on + strand at 1763.440 kb on - strand at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 1,760,650 - Pf6N2E2_1506 0.20 -0.4 1,760,721 + Pf6N2E2_1506 0.29 -0.9 1,760,722 - Pf6N2E2_1506 0.29 -0.9 1,760,849 - Pf6N2E2_1506 0.47 +1.7 1,761,105 + Pf6N2E2_1506 0.82 -0.4 1,761,106 - Pf6N2E2_1506 0.82 -1.4 1,761,201 + -1.7 1,761,202 - +1.1 1,761,246 - -2.9 1,761,269 + +0.3 1,761,272 - +0.7 1,761,289 + +0.4 1,761,289 + -1.0 1,761,418 + -0.1 1,761,419 - -0.7 1,761,626 + Pf6N2E2_1507 0.22 -1.0 1,761,627 - Pf6N2E2_1507 0.22 +0.6 1,761,627 - Pf6N2E2_1507 0.22 -0.9 1,761,693 - Pf6N2E2_1507 0.27 +2.7 1,761,926 + Pf6N2E2_1507 0.44 +3.7 1,761,966 + Pf6N2E2_1507 0.47 -0.4 1,761,966 + Pf6N2E2_1507 0.47 -0.4 1,761,966 + Pf6N2E2_1507 0.47 -1.2 1,761,967 - Pf6N2E2_1507 0.47 -0.7 1,761,967 - Pf6N2E2_1507 0.47 -1.0 1,761,967 - Pf6N2E2_1507 0.47 -0.0 1,762,139 + Pf6N2E2_1507 0.60 -0.6 1,762,230 + Pf6N2E2_1507 0.66 +0.4 1,762,231 - Pf6N2E2_1507 0.66 -2.3 1,762,231 - Pf6N2E2_1507 0.66 +1.9 1,762,319 + Pf6N2E2_1507 0.73 +1.6 1,762,320 - Pf6N2E2_1507 0.73 +0.9 1,762,433 + Pf6N2E2_1507 0.81 +0.0 1,762,433 + Pf6N2E2_1507 0.81 -0.1 1,762,434 - Pf6N2E2_1507 0.81 -1.1 1,762,434 - Pf6N2E2_1507 0.81 -1.7 1,762,514 - Pf6N2E2_1507 0.87 +0.1 1,762,514 - Pf6N2E2_1507 0.87 -1.0 1,762,765 + Pf6N2E2_1508 0.12 -1.2 1,762,765 + Pf6N2E2_1508 0.12 -0.7 1,762,766 - Pf6N2E2_1508 0.13 -1.0 1,762,766 - Pf6N2E2_1508 0.13 -0.1 1,763,210 - Pf6N2E2_1508 0.80 -0.7 1,763,210 - Pf6N2E2_1508 0.80 -2.0 1,763,331 + -1.7 1,763,387 + +0.6 1,763,440 - -0.0 1,763,508 + Pf6N2E2_1509 0.10 +0.1 1,763,508 + Pf6N2E2_1509 0.10 +1.2 1,763,508 + Pf6N2E2_1509 0.10 +0.8 1,763,509 - Pf6N2E2_1509 0.11 -0.3 1,763,509 - Pf6N2E2_1509 0.11 -0.2 1,763,509 - Pf6N2E2_1509 0.11 -0.3 1,763,509 - Pf6N2E2_1509 0.11 +0.6 1,763,509 - Pf6N2E2_1509 0.11 -1.9 1,763,654 + Pf6N2E2_1509 0.56 +0.0 1,763,654 + Pf6N2E2_1509 0.56 +2.6 1,763,654 + Pf6N2E2_1509 0.56 -2.6
Or see this region's nucleotide sequence