Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1507

Experiment: Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1506 and Pf6N2E2_1507 are separated by 89 nucleotidesPf6N2E2_1507 and Pf6N2E2_1508 overlap by 4 nucleotidesPf6N2E2_1508 and Pf6N2E2_1509 are separated by 131 nucleotides Pf6N2E2_1506 - Putative alkanesulfonate metabolism utilization regulator, at 1,760,507 to 1,761,238 _1506 Pf6N2E2_1507 - Sensor protein basS/pmrB (EC 2.7.3.-), at 1,761,328 to 1,762,686 _1507 Pf6N2E2_1508 - DNA-binding response regulator, at 1,762,683 to 1,763,342 _1508 Pf6N2E2_1509 - FIG00450070: hypothetical protein, at 1,763,474 to 1,763,797 _1509 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1760.650 kb on - strand, within Pf6N2E2_1506at 1760.721 kb on + strand, within Pf6N2E2_1506at 1760.722 kb on - strand, within Pf6N2E2_1506at 1760.849 kb on - strand, within Pf6N2E2_1506at 1761.105 kb on + strand, within Pf6N2E2_1506at 1761.106 kb on - strand, within Pf6N2E2_1506at 1761.201 kb on + strandat 1761.202 kb on - strandat 1761.246 kb on - strandat 1761.269 kb on + strandat 1761.272 kb on - strandat 1761.289 kb on + strandat 1761.289 kb on + strandat 1761.418 kb on + strandat 1761.419 kb on - strandat 1761.626 kb on + strand, within Pf6N2E2_1507at 1761.627 kb on - strand, within Pf6N2E2_1507at 1761.627 kb on - strand, within Pf6N2E2_1507at 1761.693 kb on - strand, within Pf6N2E2_1507at 1761.926 kb on + strand, within Pf6N2E2_1507at 1761.966 kb on + strand, within Pf6N2E2_1507at 1761.966 kb on + strand, within Pf6N2E2_1507at 1761.966 kb on + strand, within Pf6N2E2_1507at 1761.967 kb on - strand, within Pf6N2E2_1507at 1761.967 kb on - strand, within Pf6N2E2_1507at 1761.967 kb on - strand, within Pf6N2E2_1507at 1762.139 kb on + strand, within Pf6N2E2_1507at 1762.230 kb on + strand, within Pf6N2E2_1507at 1762.231 kb on - strand, within Pf6N2E2_1507at 1762.231 kb on - strand, within Pf6N2E2_1507at 1762.319 kb on + strand, within Pf6N2E2_1507at 1762.320 kb on - strand, within Pf6N2E2_1507at 1762.433 kb on + strand, within Pf6N2E2_1507at 1762.433 kb on + strand, within Pf6N2E2_1507at 1762.434 kb on - strand, within Pf6N2E2_1507at 1762.434 kb on - strand, within Pf6N2E2_1507at 1762.514 kb on - strand, within Pf6N2E2_1507at 1762.514 kb on - strand, within Pf6N2E2_1507at 1762.765 kb on + strand, within Pf6N2E2_1508at 1762.765 kb on + strand, within Pf6N2E2_1508at 1762.766 kb on - strand, within Pf6N2E2_1508at 1762.766 kb on - strand, within Pf6N2E2_1508at 1763.210 kb on - strand, within Pf6N2E2_1508at 1763.210 kb on - strand, within Pf6N2E2_1508at 1763.331 kb on + strandat 1763.387 kb on + strandat 1763.440 kb on - strandat 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 600 mM
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1,760,650 - Pf6N2E2_1506 0.20 -0.4
1,760,721 + Pf6N2E2_1506 0.29 -0.9
1,760,722 - Pf6N2E2_1506 0.29 -0.9
1,760,849 - Pf6N2E2_1506 0.47 +1.7
1,761,105 + Pf6N2E2_1506 0.82 -0.4
1,761,106 - Pf6N2E2_1506 0.82 -1.4
1,761,201 + -1.7
1,761,202 - +1.1
1,761,246 - -2.9
1,761,269 + +0.3
1,761,272 - +0.7
1,761,289 + +0.4
1,761,289 + -1.0
1,761,418 + -0.1
1,761,419 - -0.7
1,761,626 + Pf6N2E2_1507 0.22 -1.0
1,761,627 - Pf6N2E2_1507 0.22 +0.6
1,761,627 - Pf6N2E2_1507 0.22 -0.9
1,761,693 - Pf6N2E2_1507 0.27 +2.7
1,761,926 + Pf6N2E2_1507 0.44 +3.7
1,761,966 + Pf6N2E2_1507 0.47 -0.4
1,761,966 + Pf6N2E2_1507 0.47 -0.4
1,761,966 + Pf6N2E2_1507 0.47 -1.2
1,761,967 - Pf6N2E2_1507 0.47 -0.7
1,761,967 - Pf6N2E2_1507 0.47 -1.0
1,761,967 - Pf6N2E2_1507 0.47 -0.0
1,762,139 + Pf6N2E2_1507 0.60 -0.6
1,762,230 + Pf6N2E2_1507 0.66 +0.4
1,762,231 - Pf6N2E2_1507 0.66 -2.3
1,762,231 - Pf6N2E2_1507 0.66 +1.9
1,762,319 + Pf6N2E2_1507 0.73 +1.6
1,762,320 - Pf6N2E2_1507 0.73 +0.9
1,762,433 + Pf6N2E2_1507 0.81 +0.0
1,762,433 + Pf6N2E2_1507 0.81 -0.1
1,762,434 - Pf6N2E2_1507 0.81 -1.1
1,762,434 - Pf6N2E2_1507 0.81 -1.7
1,762,514 - Pf6N2E2_1507 0.87 +0.1
1,762,514 - Pf6N2E2_1507 0.87 -1.0
1,762,765 + Pf6N2E2_1508 0.12 -1.2
1,762,765 + Pf6N2E2_1508 0.12 -0.7
1,762,766 - Pf6N2E2_1508 0.13 -1.0
1,762,766 - Pf6N2E2_1508 0.13 -0.1
1,763,210 - Pf6N2E2_1508 0.80 -0.7
1,763,210 - Pf6N2E2_1508 0.80 -2.0
1,763,331 + -1.7
1,763,387 + +0.6
1,763,440 - -0.0
1,763,508 + Pf6N2E2_1509 0.10 +0.1
1,763,508 + Pf6N2E2_1509 0.10 +1.2
1,763,508 + Pf6N2E2_1509 0.10 +0.8
1,763,509 - Pf6N2E2_1509 0.11 -0.3
1,763,509 - Pf6N2E2_1509 0.11 -0.2
1,763,509 - Pf6N2E2_1509 0.11 -0.3
1,763,509 - Pf6N2E2_1509 0.11 +0.6
1,763,509 - Pf6N2E2_1509 0.11 -1.9
1,763,654 + Pf6N2E2_1509 0.56 +0.0
1,763,654 + Pf6N2E2_1509 0.56 +2.6
1,763,654 + Pf6N2E2_1509 0.56 -2.6

Or see this region's nucleotide sequence