Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_138 and Pf6N2E2_139 are separated by 435 nucleotides Pf6N2E2_139 and Pf6N2E2_140 are separated by 85 nucleotides
Pf6N2E2_138 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 187,665 to 188,594
_138
Pf6N2E2_139 - Two-component response regulator, at 189,030 to 189,977
_139
Pf6N2E2_140 - Glutamate carboxypeptidase (EC 3.4.17.11), at 190,063 to 191,301
_140
Position (kb) 189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.171 kb on - strand, within Pf6N2E2_138 at 188.263 kb on + strand, within Pf6N2E2_138 at 188.326 kb on + strand, within Pf6N2E2_138 at 188.381 kb on - strand, within Pf6N2E2_138 at 188.515 kb on + strand at 188.540 kb on - strand at 188.540 kb on - strand at 188.655 kb on + strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.662 kb on + strand at 188.662 kb on + strand at 188.699 kb on - strand at 188.699 kb on - strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.716 kb on - strand at 188.716 kb on - strand at 188.716 kb on - strand at 188.723 kb on - strand at 188.723 kb on - strand at 188.723 kb on - strand at 188.747 kb on + strand at 188.747 kb on + strand at 188.747 kb on + strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.789 kb on + strand at 188.789 kb on + strand at 188.789 kb on + strand at 188.790 kb on - strand at 188.833 kb on + strand at 188.833 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.941 kb on + strand at 188.942 kb on - strand at 189.066 kb on + strand at 189.118 kb on + strand at 189.119 kb on - strand at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.786 kb on + strand, within Pf6N2E2_139 at 189.786 kb on + strand, within Pf6N2E2_139 at 189.787 kb on - strand, within Pf6N2E2_139 at 189.821 kb on + strand, within Pf6N2E2_139 at 189.821 kb on + strand, within Pf6N2E2_139 at 189.822 kb on - strand, within Pf6N2E2_139 at 189.850 kb on - strand, within Pf6N2E2_139 at 189.894 kb on + strand at 189.894 kb on + strand at 189.995 kb on + strand at 189.996 kb on - strand at 190.187 kb on - strand, within Pf6N2E2_140 at 190.187 kb on - strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.275 kb on + strand, within Pf6N2E2_140 at 190.327 kb on - strand, within Pf6N2E2_140 at 190.516 kb on + strand, within Pf6N2E2_140 at 190.517 kb on - strand, within Pf6N2E2_140 at 190.517 kb on - strand, within Pf6N2E2_140 at 190.556 kb on - strand, within Pf6N2E2_140 at 190.566 kb on + strand, within Pf6N2E2_140 at 190.566 kb on + strand, within Pf6N2E2_140 at 190.567 kb on - strand, within Pf6N2E2_140
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 188,171 - Pf6N2E2_138 0.54 -1.2 188,263 + Pf6N2E2_138 0.64 -0.5 188,326 + Pf6N2E2_138 0.71 -0.9 188,381 - Pf6N2E2_138 0.77 +0.1 188,515 + -2.6 188,540 - -1.6 188,540 - -2.4 188,655 + -1.7 188,656 - +0.7 188,656 - +1.2 188,656 - -0.9 188,656 - +1.3 188,662 + +0.2 188,662 + +0.5 188,699 - +1.1 188,699 - +1.7 188,715 + -0.7 188,715 + +1.3 188,715 + +0.3 188,715 + +0.3 188,716 - -2.2 188,716 - -1.9 188,716 - +0.3 188,723 - +1.6 188,723 - -1.3 188,723 - +0.9 188,747 + +0.5 188,747 + -2.2 188,747 + +0.7 188,748 - -1.0 188,748 - +0.2 188,748 - -0.1 188,748 - -0.3 188,748 - -0.0 188,748 - +0.7 188,748 - -1.3 188,748 - -0.5 188,789 + -1.0 188,789 + +0.1 188,789 + -2.3 188,790 - +1.4 188,833 + -0.2 188,833 + +0.1 188,937 + +2.5 188,937 + +1.3 188,937 + +0.5 188,937 + -0.8 188,937 + -2.8 188,938 - -1.1 188,938 - -1.3 188,938 - +0.1 188,938 - -1.9 188,938 - +0.5 188,938 - -1.5 188,939 + -1.9 188,939 + +0.8 188,939 + -0.7 188,939 + -1.0 188,939 + -0.8 188,939 + +1.7 188,939 + -1.0 188,939 + +0.0 188,939 + +0.3 188,940 - -0.1 188,940 - -0.7 188,940 - -0.9 188,940 - +1.4 188,940 - +0.5 188,940 - -0.6 188,940 - -0.5 188,941 + -0.7 188,942 - -0.7 189,066 + +0.9 189,118 + +1.3 189,119 - -0.7 189,336 + Pf6N2E2_139 0.32 -0.5 189,336 + Pf6N2E2_139 0.32 -0.7 189,336 + Pf6N2E2_139 0.32 -2.3 189,336 + Pf6N2E2_139 0.32 -0.7 189,336 + Pf6N2E2_139 0.32 -1.1 189,336 + Pf6N2E2_139 0.32 -1.5 189,336 + Pf6N2E2_139 0.32 -0.6 189,336 + Pf6N2E2_139 0.32 -0.1 189,337 - Pf6N2E2_139 0.32 -1.0 189,337 - Pf6N2E2_139 0.32 +1.6 189,337 - Pf6N2E2_139 0.32 +1.2 189,337 - Pf6N2E2_139 0.32 +0.0 189,337 - Pf6N2E2_139 0.32 -0.4 189,337 - Pf6N2E2_139 0.32 +0.9 189,337 - Pf6N2E2_139 0.32 -0.7 189,337 - Pf6N2E2_139 0.32 -0.0 189,337 - Pf6N2E2_139 0.32 +0.9 189,337 - Pf6N2E2_139 0.32 -0.6 189,337 - Pf6N2E2_139 0.32 -0.2 189,337 - Pf6N2E2_139 0.32 +0.3 189,402 + Pf6N2E2_139 0.39 +0.2 189,402 + Pf6N2E2_139 0.39 -0.9 189,402 + Pf6N2E2_139 0.39 +0.3 189,403 - Pf6N2E2_139 0.39 -0.7 189,403 - Pf6N2E2_139 0.39 -0.0 189,403 - Pf6N2E2_139 0.39 -2.2 189,600 + Pf6N2E2_139 0.60 +0.3 189,600 + Pf6N2E2_139 0.60 -0.4 189,600 + Pf6N2E2_139 0.60 +2.5 189,600 + Pf6N2E2_139 0.60 +0.3 189,600 + Pf6N2E2_139 0.60 +0.4 189,600 + Pf6N2E2_139 0.60 -0.0 189,601 - Pf6N2E2_139 0.60 -0.0 189,601 - Pf6N2E2_139 0.60 -0.7 189,601 - Pf6N2E2_139 0.60 +0.2 189,601 - Pf6N2E2_139 0.60 -0.2 189,601 - Pf6N2E2_139 0.60 +0.8 189,601 - Pf6N2E2_139 0.60 +0.3 189,601 - Pf6N2E2_139 0.60 -2.1 189,601 - Pf6N2E2_139 0.60 +1.8 189,601 - Pf6N2E2_139 0.60 -1.7 189,601 - Pf6N2E2_139 0.60 -2.3 189,601 - Pf6N2E2_139 0.60 -1.0 189,601 - Pf6N2E2_139 0.60 -0.5 189,601 - Pf6N2E2_139 0.60 -0.7 189,601 - Pf6N2E2_139 0.60 -0.8 189,601 - Pf6N2E2_139 0.60 -0.1 189,601 - Pf6N2E2_139 0.60 -1.8 189,601 - Pf6N2E2_139 0.60 -0.1 189,601 - Pf6N2E2_139 0.60 -2.2 189,601 - Pf6N2E2_139 0.60 -1.5 189,786 + Pf6N2E2_139 0.80 -2.0 189,786 + Pf6N2E2_139 0.80 -0.2 189,787 - Pf6N2E2_139 0.80 +0.5 189,821 + Pf6N2E2_139 0.83 -0.5 189,821 + Pf6N2E2_139 0.83 +0.4 189,822 - Pf6N2E2_139 0.84 +0.6 189,850 - Pf6N2E2_139 0.86 -0.2 189,894 + -1.8 189,894 + -1.5 189,995 + -0.2 189,996 - -1.3 190,187 - Pf6N2E2_140 0.10 +1.4 190,187 - Pf6N2E2_140 0.10 -2.7 190,246 + Pf6N2E2_140 0.15 -0.8 190,246 + Pf6N2E2_140 0.15 -2.9 190,246 + Pf6N2E2_140 0.15 -3.5 190,247 - Pf6N2E2_140 0.15 -1.9 190,247 - Pf6N2E2_140 0.15 +0.1 190,247 - Pf6N2E2_140 0.15 -2.2 190,247 - Pf6N2E2_140 0.15 +0.1 190,275 + Pf6N2E2_140 0.17 -0.2 190,327 - Pf6N2E2_140 0.21 -1.5 190,516 + Pf6N2E2_140 0.37 +0.6 190,517 - Pf6N2E2_140 0.37 +2.1 190,517 - Pf6N2E2_140 0.37 -2.2 190,556 - Pf6N2E2_140 0.40 -0.3 190,566 + Pf6N2E2_140 0.41 +1.0 190,566 + Pf6N2E2_140 0.41 +0.1 190,567 - Pf6N2E2_140 0.41 -0.0
Or see this region's nucleotide sequence