Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24735 and BWI76_RS24740 are separated by 127 nucleotides BWI76_RS24740 and BWI76_RS24745 are separated by 338 nucleotides
BWI76_RS24735: BWI76_RS24735 - MFS transporter, at 5,159,400 to 5,160,701
_RS24735
BWI76_RS24740: BWI76_RS24740 - GntR family transcriptional regulator, at 5,160,829 to 5,161,605
_RS24740
BWI76_RS24745: BWI76_RS24745 - membrane protein, at 5,161,944 to 5,162,606
_RS24745
Position (kb)
5160
5161
5162 Strain fitness (log2 ratio)
-1
0
1 at 5160.168 kb on + strand, within BWI76_RS24735 at 5160.175 kb on + strand, within BWI76_RS24735 at 5160.183 kb on - strand, within BWI76_RS24735 at 5160.251 kb on - strand, within BWI76_RS24735 at 5160.285 kb on - strand, within BWI76_RS24735 at 5160.291 kb on - strand, within BWI76_RS24735 at 5160.291 kb on - strand, within BWI76_RS24735 at 5160.350 kb on - strand, within BWI76_RS24735 at 5160.387 kb on + strand, within BWI76_RS24735 at 5160.659 kb on + strand at 5160.944 kb on - strand, within BWI76_RS24740 at 5161.454 kb on + strand, within BWI76_RS24740 at 5161.472 kb on - strand, within BWI76_RS24740 at 5161.621 kb on - strand at 5161.652 kb on - strand at 5161.678 kb on + strand at 5161.688 kb on + strand at 5161.836 kb on - strand at 5161.903 kb on - strand at 5161.926 kb on + strand at 5161.964 kb on + strand at 5162.032 kb on - strand, within BWI76_RS24745 at 5162.100 kb on - strand, within BWI76_RS24745 at 5162.194 kb on + strand, within BWI76_RS24745 at 5162.238 kb on + strand, within BWI76_RS24745 at 5162.451 kb on + strand, within BWI76_RS24745
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 5,160,168 + BWI76_RS24735 0.59 +0.5 5,160,175 + BWI76_RS24735 0.60 -0.9 5,160,183 - BWI76_RS24735 0.60 -0.1 5,160,251 - BWI76_RS24735 0.65 -0.3 5,160,285 - BWI76_RS24735 0.68 -0.7 5,160,291 - BWI76_RS24735 0.68 +1.0 5,160,291 - BWI76_RS24735 0.68 -0.1 5,160,350 - BWI76_RS24735 0.73 -0.3 5,160,387 + BWI76_RS24735 0.76 +0.7 5,160,659 + +0.6 5,160,944 - BWI76_RS24740 0.15 +0.2 5,161,454 + BWI76_RS24740 0.80 +0.4 5,161,472 - BWI76_RS24740 0.83 +0.6 5,161,621 - +0.6 5,161,652 - +0.4 5,161,678 + +1.6 5,161,688 + -0.2 5,161,836 - -0.0 5,161,903 - -0.1 5,161,926 + +0.1 5,161,964 + -0.1 5,162,032 - BWI76_RS24745 0.13 +0.3 5,162,100 - BWI76_RS24745 0.24 -0.8 5,162,194 + BWI76_RS24745 0.38 -0.3 5,162,238 + BWI76_RS24745 0.44 -0.2 5,162,451 + BWI76_RS24745 0.76 -0.4
Or see this region's nucleotide sequence