Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19995 and BWI76_RS20000 are separated by 204 nucleotides BWI76_RS20000 and BWI76_RS20005 are separated by 96 nucleotides BWI76_RS20005 and BWI76_RS20010 are separated by 269 nucleotides
BWI76_RS19995: BWI76_RS19995 - IclR family transcriptional regulator, at 4,189,179 to 4,189,961
_RS19995
BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362
_RS20000
BWI76_RS20005: BWI76_RS20005 - membrane protein, at 4,191,459 to 4,192,001
_RS20005
BWI76_RS20010: BWI76_RS20010 - catalase, at 4,192,271 to 4,193,719
_RS20010
Position (kb)
4190
4191
4192 Strain fitness (log2 ratio)
-1
0
1 at 4189.302 kb on - strand, within BWI76_RS19995 at 4189.375 kb on - strand, within BWI76_RS19995 at 4189.976 kb on - strand at 4190.084 kb on + strand at 4190.092 kb on - strand at 4190.611 kb on - strand, within BWI76_RS20000 at 4191.142 kb on - strand, within BWI76_RS20000 at 4191.665 kb on + strand, within BWI76_RS20005 at 4191.715 kb on + strand, within BWI76_RS20005 at 4191.904 kb on + strand, within BWI76_RS20005 at 4191.926 kb on + strand, within BWI76_RS20005 at 4191.957 kb on + strand at 4192.059 kb on + strand at 4192.099 kb on - strand at 4192.114 kb on - strand at 4192.291 kb on - strand at 4192.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,189,302 - BWI76_RS19995 0.16 -0.8 4,189,375 - BWI76_RS19995 0.25 -0.3 4,189,976 - -0.0 4,190,084 + -0.4 4,190,092 - +0.1 4,190,611 - BWI76_RS20000 0.37 -0.2 4,191,142 - BWI76_RS20000 0.82 +1.2 4,191,665 + BWI76_RS20005 0.38 +0.0 4,191,715 + BWI76_RS20005 0.47 +0.0 4,191,904 + BWI76_RS20005 0.82 +0.3 4,191,926 + BWI76_RS20005 0.86 -0.1 4,191,957 + -0.5 4,192,059 + -0.4 4,192,099 - -1.1 4,192,114 - +0.1 4,192,291 - +0.2 4,192,335 + +0.3
Or see this region's nucleotide sequence