Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12675

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12665 and BWI76_RS12670 are separated by 275 nucleotidesBWI76_RS12670 and BWI76_RS12675 overlap by 1 nucleotidesBWI76_RS12675 and BWI76_RS12680 are separated by 47 nucleotides BWI76_RS12665: BWI76_RS12665 - hypothetical protein, at 2,641,155 to 2,641,349 _RS12665 BWI76_RS12670: BWI76_RS12670 - DNA polymerase V subunit UmuD, at 2,641,625 to 2,642,047 _RS12670 BWI76_RS12675: BWI76_RS12675 - putative UV protection and mutation protein, at 2,642,047 to 2,643,312 _RS12675 BWI76_RS12680: BWI76_RS12680 - oxidoreductase, at 2,643,360 to 2,644,427 _RS12680 Position (kb) 2642 2643 2644Strain fitness (log2 ratio) -1 0 1 2at 2641.176 kb on + strand, within BWI76_RS12665at 2641.197 kb on - strand, within BWI76_RS12665at 2641.386 kb on - strandat 2641.386 kb on - strandat 2641.388 kb on + strandat 2641.396 kb on + strandat 2641.404 kb on - strandat 2641.423 kb on - strandat 2641.456 kb on + strandat 2641.456 kb on + strandat 2641.464 kb on - strandat 2641.808 kb on - strand, within BWI76_RS12670at 2641.981 kb on + strand, within BWI76_RS12670at 2642.053 kb on + strandat 2642.244 kb on + strand, within BWI76_RS12675at 2642.454 kb on + strand, within BWI76_RS12675at 2642.489 kb on - strand, within BWI76_RS12675at 2642.650 kb on + strand, within BWI76_RS12675at 2642.739 kb on + strand, within BWI76_RS12675at 2642.744 kb on + strand, within BWI76_RS12675at 2642.760 kb on + strand, within BWI76_RS12675at 2642.930 kb on - strand, within BWI76_RS12675at 2643.057 kb on - strand, within BWI76_RS12675at 2643.131 kb on + strand, within BWI76_RS12675at 2643.212 kb on - strandat 2643.232 kb on - strandat 2643.366 kb on - strandat 2643.645 kb on + strand, within BWI76_RS12680at 2643.766 kb on + strand, within BWI76_RS12680

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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2,641,176 + BWI76_RS12665 0.11 +0.1
2,641,197 - BWI76_RS12665 0.22 -0.2
2,641,386 - -0.3
2,641,386 - +0.1
2,641,388 + -0.8
2,641,396 + -1.2
2,641,404 - -1.2
2,641,423 - -0.0
2,641,456 + -0.4
2,641,456 + -0.0
2,641,464 - +0.2
2,641,808 - BWI76_RS12670 0.43 -0.3
2,641,981 + BWI76_RS12670 0.84 -0.6
2,642,053 + -0.6
2,642,244 + BWI76_RS12675 0.16 +0.3
2,642,454 + BWI76_RS12675 0.32 +0.2
2,642,489 - BWI76_RS12675 0.35 +1.3
2,642,650 + BWI76_RS12675 0.48 +1.3
2,642,739 + BWI76_RS12675 0.55 +0.5
2,642,744 + BWI76_RS12675 0.55 -0.3
2,642,760 + BWI76_RS12675 0.56 +2.1
2,642,930 - BWI76_RS12675 0.70 +0.6
2,643,057 - BWI76_RS12675 0.80 -0.0
2,643,131 + BWI76_RS12675 0.86 +0.2
2,643,212 - +0.2
2,643,232 - +0.3
2,643,366 - -0.3
2,643,645 + BWI76_RS12680 0.27 -0.6
2,643,766 + BWI76_RS12680 0.38 -0.3

Or see this region's nucleotide sequence